Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d12r
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03670.1 68414.m00346 ankyrin repeat family protein contains ...    29   2.9  
At1g68470.1 68414.m07822 exostosin family protein contains Pfam ...    28   6.6  

>At1g03670.1 68414.m00346 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 616

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -2

Query: 140 CDAQNESSQLSS*AKSTTNPE*WSDLIKQKQRTILHITLICLIR 9
           CD+++E+   SS + S ++P+ W+    + +  I++  ++C +R
Sbjct: 3   CDSKSETVSSSSTSGSLSDPDQWTIFKDKDESEIMNPAILCAVR 46


>At1g68470.1 68414.m07822 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 455

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 313 IRSKSIGVCIHTSFKEILKCENG 245
           IR + I  C  +S  E+LKCENG
Sbjct: 294 IRDELIKQCAESSHCELLKCENG 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,230,680
Number of Sequences: 28952
Number of extensions: 251041
Number of successful extensions: 609
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)