Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d12f
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    27   1.7  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    27   3.0  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   3.9  

>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 299 ENNSTCWVYQPYK-VISECHPCSDFEIRSKSIGVCIHTSFKEILKCENGETVTRS 460
           EN S     Q YK  I E +   DF + +  +G+CIHT+   +L  + G T  ++
Sbjct: 226 ENESLPDYAQRYKQAIIEKYGEFDFAVDATGVGICIHTA---VLALKRGGTFVQA 277


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 416 KEILKCENGETVTRSCDRVAYLEKWAYWKFTIWSFVIG 529
           KEI K   G+TV ++C R+AY E     +   W   +G
Sbjct: 545 KEIGKRWFGKTVIKTCARLAYSEAQGVIEGKSWDDAVG 582


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 255 LSASRDSTMRTITVNMPRHNVPRSIHLFEH 166
           + +S D+ +  I  N+   NVPR +H  EH
Sbjct: 30  IESSDDAFLSKIYENVSNFNVPRKLHDIEH 59


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 233 VESRLAERLSSSHRMKNKTFPTENNSTCWVYQPYK 337
           ++ R   +   SH  K+   P+E  S CW   P K
Sbjct: 24  LDVRAQSKYEISHLRKSVNIPSEKISKCWYQLPAK 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,870
Number of Sequences: 5004
Number of extensions: 50686
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)