Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d12f
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28972| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_2771| Best HMM Match : rve (HMM E-Value=0.00087)                    29   2.4  
SB_2998| Best HMM Match : SRP19 (HMM E-Value=5)                        28   7.2  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_52297| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_28972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 208 HVNCNSSHCRITAS*EIIKQS*NEKQNIPNREQLNL 315
           HVNC S+H + TA+  I ++  NEK+   N+  +N+
Sbjct: 94  HVNCRSNHGKSTAT--IFREQENEKKRKYNQRVMNV 127


>SB_2771| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 809

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -1

Query: 478 IGHSVAASCHSFSIFTLQ--NFFKTCMYTYSYTLT 380
           IG++V+A C + ++  L+  + F  C YT++YT T
Sbjct: 451 IGYAVSACCDAAAVPALRLGDLFPYCAYTHAYTYT 485


>SB_2998| Best HMM Match : SRP19 (HMM E-Value=5)
          Length = 258

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +2

Query: 317 WVYQPYKVISECHPCSDFEIRSKSIGVCIHTSFKEILKCENGETVTRSCDRVAYLEKWAY 496
           ++  P+++I  C  C++ ++ S    +   T  K I     GET  R  D VA LEKWA 
Sbjct: 164 FLVNPFQII--CPICNEIKVLSNMNQIRALT--KHIRDAHYGETKGR--DLVARLEKWAK 217

Query: 497 WKFT 508
             +T
Sbjct: 218 NNYT 221


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 394  SYTLTSNLKI*ARMTFTNNFVWLINP 317
            SYT++S +++  R ++   F W++ P
Sbjct: 1187 SYTISSTVELDCRESYETEFAWMVTP 1212


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +2

Query: 266 SHRMKNKTFPTENNSTCWVYQPYKVISECHP---CSDFEIRSKSIGVCIHTSFKEILKCE 436
           S+R K KT  T +  TC   + +    +CHP   C    +  + + VC+     + + CE
Sbjct: 726 SYRCKCKTGYTGDGKTCTEAEEFYCPQKCHPNAKCVRLAVGGQ-VCVCLPGYTGDGVSCE 784

Query: 437 NGETVTRSCDRVAYLEK 487
           + E         A L++
Sbjct: 785 HDECFVADVKECARLDR 801


>SB_52297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 46  PSKKTNDIGWKTN*LLYSFWY*R*LH 123
           P     DIGW T  L+   WY + LH
Sbjct: 86  PQTSAQDIGWNTEPLIDKTWYDQRLH 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,899,051
Number of Sequences: 59808
Number of extensions: 352872
Number of successful extensions: 685
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)