Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d12f
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68470.1 68414.m07822 exostosin family protein contains Pfam ...    28   5.9  
At1g22610.1 68414.m02823 C2 domain-containing protein contains I...    27   7.8  

>At1g68470.1 68414.m07822 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 455

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 374 IRSKSIGVCIHTSFKEILKCENG 442
           IR + I  C  +S  E+LKCENG
Sbjct: 294 IRDELIKQCAESSHCELLKCENG 316


>At1g22610.1 68414.m02823 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1029

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 103 RKNIIINLFSSQYHLFSLKEHKSGFHTSVTTLTS 2
           R+ ++  +    YH+FSL+  K+ F   ++ L+S
Sbjct: 803 RREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSS 836


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,506,499
Number of Sequences: 28952
Number of extensions: 241026
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)