Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d10r
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   124   1e-29
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   6.8  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  124 bits (299), Expect = 1e-29
 Identities = 53/74 (71%), Positives = 63/74 (85%)
 Frame = -1

Query: 623 LAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTI 444
           LA+DLL+PS  SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C+++
Sbjct: 3   LAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASV 62

Query: 443 LCQPTGGRARLTEG 402
           LCQPTGG+ARL EG
Sbjct: 63  LCQPTGGKARLMEG 76


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +2

Query: 323 YELKQDCARLCNSLLWVTQVSNFTASYLQLI*HGHQWVDKGSLS 454
           Y    +C R CN  +W T ++ F    +  +  G  +   G LS
Sbjct: 318 YGFYDECKRRCNIKIWKTFINTFNCLPIASVVAGKIFCVHGGLS 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,788
Number of Sequences: 5004
Number of extensions: 42626
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)