Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d10r
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   119   2e-27
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    59   3e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     57   1e-08
04_04_0303 + 24269467-24270741                                         31   0.57 
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668...    27   9.2  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  119 bits (287), Expect = 2e-27
 Identities = 52/72 (72%), Positives = 59/72 (81%)
 Frame = -1

Query: 617 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 438
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66

Query: 437 QPTGGRARLTEG 402
           QPTGG+ARLTEG
Sbjct: 67  QPTGGKARLTEG 78


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 26/46 (56%), Positives = 32/46 (69%)
 Frame = -1

Query: 617 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 480
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = -1

Query: 617 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 501
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>04_04_0303 + 24269467-24270741
          Length = 424

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = -1

Query: 620 AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 441
           A+ LLHP          L  ++PH  S  +D  CP  Y+I ++     RVV    C+++ 
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197

Query: 440 CQPTGGRA 417
           C  TG  A
Sbjct: 198 CSATGAGA 205


>03_02_0238 -
           6687334-6687421,6687456-6687512,6688266-6688351,
           6688410-6688589
          Length = 136

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -1

Query: 512 CYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGKML*SL 384
           CYKI+ ++SH Q ++    C  IL +PTG R   T  KM  SL
Sbjct: 96  CYKISKIYSHGQSLL----CLDIL-RPTGRRIPKTT-KMAESL 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,657,879
Number of Sequences: 37544
Number of extensions: 260288
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)