Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d10r
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   7.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.4  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   9.8  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 313 LILI*A*TRLCKIVQFIVMGHSG-FKLYSILPS 408
           L L+ A TRL K+  FIV G  G F + +IL S
Sbjct: 64  LSLVCADTRLNKLAVFIVAGAVGVFSVLTILIS 96


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 492 F*SRTESGGLRWMLNDPLSTHWW 424
           F  R  +G  +W++N+     WW
Sbjct: 24  FLKRPITGDEKWVVNNIKRKRWW 46


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 195 VYGVINTSSRLLNVSFAMLLKVM*YPQI 278
           ++GVI  S   +++  A LL++   PQI
Sbjct: 70  IFGVIGGSYSSVSLQVANLLRLFHIPQI 97


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 195 VYGVINTSSRLLNVSFAMLLKVM*YPQI 278
           ++GVI  S   +++  A LL++   PQI
Sbjct: 160 IFGVIGGSYSSVSLQVANLLRLFHIPQI 187


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 468 HHSLCVTKNCCN 503
           HH + + KN CN
Sbjct: 24  HHKILIKKNKCN 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,243
Number of Sequences: 438
Number of extensions: 2672
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)