Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d10f
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27219| Best HMM Match : Cad (HMM E-Value=4)                         36   0.019
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    33   0.23 
SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
          Length = 297

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 22/78 (28%), Positives = 44/78 (56%)
 Frame = -3

Query: 347 INIFLHLN*FFIS*LLYFQVQISILYYSTDVFYDLQYIYVN*SIASDILCHVYFSVSNRI 168
           I+++  +N ++ S  +Y+ V +   YYS DV+Y +   Y   S+      +VY+SV+  +
Sbjct: 18  IDVYYSVNVYY-SINVYYSVNV---YYSIDVYYSIDVYY---SVTVYYSINVYYSVN--V 68

Query: 167 YLNLHSIPLSNLYYCINI 114
           Y +++     N+YY +N+
Sbjct: 69  YYSINVYYSINVYYSVNV 86



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
 Frame = -3

Query: 305 LLYF-QVQISI-LYYSTDVFYDLQYIY-VN*SIASDIL--CHVYFSVSNRIYLNLHSIPL 141
           L YF  V  SI +YYS +V+Y +   Y VN   + D+     VY+SV+  +Y +++    
Sbjct: 8   LYYFVNVYYSIDVYYSVNVYYSINVYYSVNVYYSIDVYYSIDVYYSVT--VYYSINVYYS 65

Query: 140 SNLYYCINISTRISL 96
            N+YY IN+   I++
Sbjct: 66  VNVYYSINVYYSINV 80



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = -3

Query: 347 INIFLHLN*FFIS*LLY-FQVQISI-LYYSTDVFYDLQYIYVN*SIASDILCHVYFSVSN 174
           IN++  +N ++   + Y   V  S+ +YYS +V+Y +   Y   SI      +VY+SV+ 
Sbjct: 30  INVYYSVNVYYSIDVYYSIDVYYSVTVYYSINVYYSVNVYY---SINVYYSINVYYSVN- 85

Query: 173 RIYLNLHSIPLSNLYYCINISTRISL 96
            +Y +++     N+YY +N+   I++
Sbjct: 86  -VYYSVNVYYSVNVYYSVNVYYSINV 110



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 22/84 (26%), Positives = 46/84 (54%)
 Frame = -3

Query: 347 INIFLHLN*FFIS*LLYFQVQISILYYSTDVFYDLQYIYVN*SIASDILCHVYFSVSNRI 168
           IN++  +N ++ S  +Y+ V +   YYS +V+Y +   Y   S+      +VY+SV+  +
Sbjct: 78  INVYYSVNVYY-SVNVYYSVNV---YYSVNVYYSINVYY---SVNVYYSVNVYYSVN--V 128

Query: 167 YLNLHSIPLSNLYYCINISTRISL 96
           Y +++     N+YY + +   I++
Sbjct: 129 YYSVNVYYSVNVYYSVTVYYSINV 152


>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 405 LLHPSPA-SERRKHKL-KRLVPHPNSYFMDVKCPGCYKITTVFSHAQRV 545
           L H  P  S R K  + KR  P P     ++K P  Y++TT+ +H+ RV
Sbjct: 411 LTHSVPIISGRLKTSMNKRTKPKPGERATEIKSPSTYQVTTMVTHSPRV 459


>SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = -1

Query: 265 PLMYFTICSIFM*I---NQLLLTFYAMCTFQCLTVFI*TC--TQYRYLIYTIVLILAHAY 101
           P M +  CS+F+ I   +  L   YA C+   L   +  C    Y Y    +++ + HA 
Sbjct: 99  PFMIYAYCSLFVFITIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAC 158

Query: 100 L 98
           L
Sbjct: 159 L 159


>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 492 KCPGCYKITTVFSHAQRVVVCAGC 563
           +CP CY ++ V  + Q V  C+ C
Sbjct: 208 RCPRCYPMSKVLPNVQGVTQCSRC 231


>SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 447 LKRLVPHPNSYFMDVKCPGCYKI 515
           ++RLVP  NSY + +   GC  I
Sbjct: 95  VRRLVPRTNSYILSIDLEGCTSI 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,569,353
Number of Sequences: 59808
Number of extensions: 298969
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)