Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d10f
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...   118   2e-27
U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor...    31   0.83 
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    31   0.83 
AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical ...    29   2.5  
U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    27   7.7  
U41018-4|AAA82327.2|  321|Caenorhabditis elegans Dehydrogenases,...    27   7.7  
U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine rec...    27   7.7  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score =  118 bits (285), Expect = 2e-27
 Identities = 51/69 (73%), Positives = 57/69 (82%)
 Frame = +3

Query: 393 LAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTI 572
           LA+DLLHP P  E R HKLKRLV HPNSYFMDVKC GC+KI+TVFSHA  VVVC GC+T+
Sbjct: 3   LAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTV 62

Query: 573 LCXPTGGRA 599
           LC PT G+A
Sbjct: 63  LCQPTRGKA 71


>U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform c protein.
          Length = 605

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 417 SPASERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 578
           +P  ERR  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 417 SPASERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 578
           +P  ERR  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.10 protein.
          Length = 189

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 408 LHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVC 554
           LH +P      H  +R VP    + MD+KCP C+K+         +V+C
Sbjct: 81  LHATPGRLHGHHS-RRSVP---VFMMDMKCPVCHKVVPSDDADIHLVMC 125


>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 498 PGCYKITTVFSHAQRVVVCAGCSTILCXPTGGR 596
           P CY+  +VFS   R   C  C  I C     R
Sbjct: 161 PECYRCRSVFSVFTRKHHCRACGQIFCDKCSSR 193


>U41018-4|AAA82327.2|  321|Caenorhabditis elegans Dehydrogenases,
           short chain protein26 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 191 YFSVSNRIYLNLHSIPLSNLYYCINISTRISLKN 90
           +F     I+ +++++ L N YYC    TRI  KN
Sbjct: 117 FFERDPEIWDDINNVGLRNQYYCSVYGTRIMRKN 150


>U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 29 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -3

Query: 299 YFQVQISILYYSTDVFYDLQYIYVN*SIASDILC-----HVYFSVSNRIYLNLH 153
           Y     SIL+ S+D FYD  ++Y   ++ S   C        FS++ R + N H
Sbjct: 89  YSNAPCSILFQSSDCFYD-NFLYYQTALFSSFYCVSLFLDRLFSLNPRSFYNSH 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,747
Number of Sequences: 27780
Number of extensions: 231320
Number of successful extensions: 444
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)