Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d10f
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           116   1e-26
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   110   6e-25
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           108   2e-24
At3g55080.1 68416.m06117 SET domain-containing protein low simil...    29   3.1  
At2g44870.1 68415.m05586 expressed protein                             28   5.4  
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l...    27   9.5  

>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  116 bits (279), Expect = 1e-26
 Identities = 49/67 (73%), Positives = 55/67 (82%)
 Frame = +3

Query: 399 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 578
           IDLLHP P  E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C T+LC
Sbjct: 7   IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66

Query: 579 XPTGGRA 599
            PTGG+A
Sbjct: 67  QPTGGKA 73


>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  110 bits (265), Expect = 6e-25
 Identities = 48/67 (71%), Positives = 54/67 (80%)
 Frame = +3

Query: 399 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 578
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C TILC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66

Query: 579 XPTGGRA 599
            PTGG+A
Sbjct: 67  QPTGGKA 73


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  108 bits (260), Expect = 2e-24
 Identities = 46/67 (68%), Positives = 54/67 (80%)
 Frame = +3

Query: 399 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 578
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VV+C  C T+LC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66

Query: 579 XPTGGRA 599
            PTGG+A
Sbjct: 67  TPTGGKA 73


>At3g55080.1 68416.m06117 SET domain-containing protein low
           similarity to ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I [Spinacia oleracea] GI:3403236; contains Pfam profile
           PF00856: SET domain
          Length = 463

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = -3

Query: 194 VYFSVSNRIYLNLHSIPLSNLYYCINISTRISLKNQ*SHFTLF*QMYFVKYTPAWLQL*C 15
           +  S  NR+ +  HS+ +  +  C  +S R +++ Q +   L+ ++  ++    WL   C
Sbjct: 397 ILLSHINRL-IEDHSVCIKEMEECYFVSQRFAVRRQMARDLLYGELRVLRSAAEWLNHYC 455

Query: 14  TT 9
           TT
Sbjct: 456 TT 457


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 471 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCXPTG 590
           N++ +  +CP C +      +  +++ C GC  I+  P G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212


>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 556

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 518 CNLVTARALNIHEIRVRMWH*PLKL 444
           C++  A  LNIH++   +WH PL L
Sbjct: 234 CHVAAANILNIHDV-PNIWHVPLLL 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,394,641
Number of Sequences: 28952
Number of extensions: 201236
Number of successful extensions: 388
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)