Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d09r
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 33 0.19
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.43
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.43
At4g17740.2 68417.m02649 C-terminal processing protease, putativ... 31 0.75
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 31 1.00
At2g13560.1 68415.m01495 malate oxidoreductase, putative similar... 29 2.3
At3g49200.1 68416.m05377 hypothetical protein 28 5.3
At1g49590.1 68414.m05560 formin-binding protein-related similar ... 28 7.0
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 28 7.0
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 28 7.0
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 28 7.0
At4g00350.1 68417.m00046 MATE efflux family protein similar to r... 27 9.3
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 27 9.3
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 27 9.3
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /... 27 9.3
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 616 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITG 461
+A + S IA +LKN KL +N + + L +A + + GK+ + G
Sbjct: 413 LAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGKEVG 464
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 616 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 470
+A + S IA +LKN KL +N + + L +A + + GK+ +
Sbjct: 413 LAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 616 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 470
+A + S IA +LKN KL +N + + L +A + + GK+ +
Sbjct: 413 LAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461
>At4g17740.2 68417.m02649 C-terminal processing protease, putative
similar to C-terminal protease precursor [Spinacia
oleracea] GI:999435; similar to SP|Q44879| (Bartonella
bacilliformis)
Length = 505
Score = 31.1 bits (67), Expect = 0.75
Identities = 27/108 (25%), Positives = 49/108 (45%)
Frame = +3
Query: 312 LTKKSMCPIAMPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSK 491
L S+ PI+ KP + P+ S+ I+ S+ SRS + SR+ + P ++ ++
Sbjct: 4 LASSSLSPISFTKPNKINPNFSIQISKASKFSYARSRSNI---SRSNAANPGVVFVC-NR 59
Query: 492 FLPVTPAT*APRLKPTMCTLLSGNLRFFKKVAILDPTPVTAITAVEYV 635
FL V +L + S N R VA++ V ++++ V
Sbjct: 60 FLCVIERNDQRKLSGKVMMKSSVNFRQNLSVALVRIVSVLLVSSISVV 107
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 30.7 bits (66), Expect = 1.00
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = -2
Query: 433 NNVLRLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNLCSHN--- 263
N + L N Q +EV+ + G L + H RL++ T+ LC N
Sbjct: 417 NTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLIS 476
Query: 262 -RAYEVFAATITHGKHYGNQCSTE 194
R V + G H +Q S+E
Sbjct: 477 ARLDAVSEISACMGSHSSSQLSSE 500
>At2g13560.1 68415.m01495 malate oxidoreductase, putative similar to
NAD-dependent malic enzyme 62 kDa isoform, mitochondrial
precursor (EC 1.1.1.39) (NAD-ME) (SP:P37221) {Solanum
tuberosum}
Length = 623
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = -2
Query: 508 GVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDAQYVE-VIHTDGSGV------NKNG 350
G+ +N G R G+ SA D + + A+ V+ ++ TDGS + +G
Sbjct: 148 GLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVHG 207
Query: 349 LGIAIGHIDFFVNGRLVQP 293
+GIA+G +D +V + P
Sbjct: 208 IGIAVGKLDLYVAAAGINP 226
>At3g49200.1 68416.m05377 hypothetical protein
Length = 507
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = -2
Query: 490 LEGKVARITG--LDPSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGIA 338
LE V+ +T LD S WE ++L L T+DA+ V V+ H+ G G++ L +A
Sbjct: 120 LESYVSDLTTIPLDTSKPLWEVHLLDLKTSDAENVAVLRIHHSLGDGMSMMSLVLA 175
>At1g49590.1 68414.m05560 formin-binding protein-related similar to
formin binding protein 21 (GI:3550080) [Homo sapiens];
similar to formin binding protein 21 (GI:3550077) [Mus
musculus]; similar to Dinap1-interacting protein 1
(GI:8745458) [Crypthecodinium cohnii]
Length = 242
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 164 ISS*NGYCQTCKAWVWNVPSKYRH 93
+S N +C+ CK W+ N P+ R+
Sbjct: 6 VSQGNKWCEFCKIWIQNNPTSIRN 29
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 298 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 188
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 298 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 188
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 298 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 188
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At4g00350.1 68417.m00046 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554
Uncharacterized membrane protein family
Length = 542
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 25 ILLVITENFVLSFV-GITNGMGTSCRYLLGTFQTHALQVWQYPFQLEILGNYLRLSPL 195
I L + NF F+ G+ + + T C G Q L V+ L +LG + L PL
Sbjct: 130 IALSVVSNFSFGFLLGMASALETLCGQAFGAGQMDMLGVYMQRSWLILLGTSVCLLPL 187
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 357 LLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSKFLPVTPAT 515
L + P+ T+++ VP ST S S+ + + P +LPS PAT
Sbjct: 451 LASSTPATGSTNSFTGFAVPKTSTPASSSQPQTTSPAFSFSLPSSTSTTAPAT 503
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 250 VFAATITHGKHYGNQCSTEAEI 185
+F TI YG++C+TEAEI
Sbjct: 1111 LFGTTIYENIAYGHECATEAEI 1132
>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
gibberellin-responsive modulator identical to GB:Y11336,
member of SCARECROW family
Length = 587
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 472 RITGLDPSARDWENNVLRLGTNDAQYVEVIHTD 374
R+TG+ P A D +++ +G AQ E IH +
Sbjct: 354 RLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVE 386
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,928
Number of Sequences: 28952
Number of extensions: 317428
Number of successful extensions: 819
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -