Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d09f
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f...    33   0.12 
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.27 
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.27 
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    30   1.4  
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    30   1.4  
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein...    29   2.5  
At4g21326.1 68417.m03081 subtilase family protein contains simil...    28   4.4  

>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 475

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVARITG 527
            + GK+ +  G
Sbjct: 454 TISGKIGKEVG 464


>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 488

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVAR 518
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 550

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVAR 518
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 233 NNTRSQWHCYDDDQPYC*RRVFKKWQ---L*RYRC 328
           NNTRS+  C+  D+  C  +V  KWQ      YRC
Sbjct: 614 NNTRSRPFCHHHDEDRCPYKVIFKWQDMTFCSYRC 648


>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 NNTRSQWHCYDDDQPYC*RRVFKKWQ 310
           NNTRS+  C+  D+  C  +V  KWQ
Sbjct: 622 NNTRSRPFCHHHDEDRCPHKVVFKWQ 647


>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to unknown protein (emb|CAB88055.1)
          Length = 212

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 90  QNLERFGSLNKYYYYSNAQRNPITLTEDH---FPTG--NDPAAPFNNNWDIVVIIH 242
           ++L  +GS   +Y+Y    +N +T T+ +    PTG   D   P  N  ++V I H
Sbjct: 53  RDLPGYGSEEHWYFYCKKPKNQVTRTKSYNLWIPTGEKTDVLDPKKNGGELVGIKH 108


>At4g21326.1 68417.m03081 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 690

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 24/86 (27%), Positives = 34/86 (39%)
 Frame = +3

Query: 249 SGTATTTINPIVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKL 428
           S  ATTTIN        RSG+Y   +V    F    Y      +  + SS +     +K+
Sbjct: 357 SALATTTINKAAGLIVARSGDYQSDIVYNQPFIYVDYEVGAKILRYIRSSSS---PTIKI 413

Query: 429 PLNKVHIVGFNLGAHVAGVTGRNLEG 506
              K  +VG  +   V G + R   G
Sbjct: 414 STGKT-LVGRPIATQVCGFSSRGPNG 438


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,324
Number of Sequences: 28952
Number of extensions: 283271
Number of successful extensions: 656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)