Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d08r
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    38   0.001
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    31   0.12 
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   7.8  

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 9/164 (5%)
 Frame = -1

Query: 662 KVPVSYAHTVKATTPLWTAGLARVLFXERVSRXXXXXXXXXXXXXXXASLTELQFDXXXX 483
           K+PVS  HTVKA +PL+T    R +F    S                A   EL  D    
Sbjct: 93  KIPVSTVHTVKALSPLFTVLAYRFMFRHVYSAMTYFSLVPLTFGVTLACSFELSADIVGL 152

Query: 482 XXXXXXXXXXXLQHLYSKRALQDSGVH------HXXXXXXXXXXXLVP---MAPLWLVRD 330
                       Q+++  +   ++  H      H            V    M P+WL ++
Sbjct: 153 LYALISTCIFVSQNIFGSKIFMEAKSHSTHTKKHYNKLNLLLYSSGVAFIVMIPVWLYQE 212

Query: 329 AGAVLRAQVAWNRAGPLLLADGVLAWLQAVAAFSVLSRVSPLTY 198
             A L  +V  +     L+ +G+  + Q + AF++LS +SP+ Y
Sbjct: 213 GFAYL-PEVG-SPVFLNLIYNGLSHFFQNILAFTLLSIISPVAY 254


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = -1

Query: 302 AWNRAGP----LLLADGVLAWLQAVAAFSVLSRVSPLTYXXXXXXXXXXXXXXSLVVLRN 135
           AW   GP    ++L  G LA+    + F ++ + S +T               S +   +
Sbjct: 269 AWKEFGPFMSVVILVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKEIITIIASTLFYHD 328

Query: 134 PAPPLNVVGMSVAVLGVLAYD 72
              P+N+VG+ + + G+  Y+
Sbjct: 329 ILLPINIVGLVITLCGIGVYN 349


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 157 APTTTARFAADATEYVSGDTRDN 225
           APTT ARF+       SGD + N
Sbjct: 59  APTTVARFSPSGYYVASGDNQGN 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.125    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,094,859
Number of Sequences: 5004
Number of extensions: 11378
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)