Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d08r
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   3e-14
SB_703| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.2  

>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 6/207 (2%)
 Frame = -1

Query: 674  VSIWKVPVSYAHTVKATTPLWTAGLARVLFXERVSRXXXXXXXXXXXXXXXASLTELQFD 495
            VSIWKVPVSYAHT                F +   R               ++ TEL FD
Sbjct: 1679 VSIWKVPVSYAHTGHNAN-------IHSCFIKINFRPKTNTFAPIVLGVMVSTATELSFD 1731

Query: 494  XXXXXXXXXXXXXXXLQHLYSKRALQDSGVHHXXXXXXXXXXXLVPMAPLWLVRDAGAVL 315
                           +Q++++K+ +++  + H            V + P+W + D   +L
Sbjct: 1732 IVGLMSALLATLTFAVQNIFTKKMMRELHISHLRLLSILARIATVILLPIWALYDLRKIL 1791

Query: 314  ------RAQVAWNRAGPLLLADGVLAWLQAVAAFSVLSRVSPLTYXXXXXXXXXXXXXXS 153
                     + W     ++  +G L ++Q + AF+VLS ++PL+Y              S
Sbjct: 1792 TYSDLSEENILWLLV--VITINGFLNFVQNMVAFTVLSLITPLSYSVATASKRILVISVS 1849

Query: 152  LVVLRNPAPPLNVVGMSVAVLGVLAYD 72
            L +LRNP    N +GM +A+ GV  Y+
Sbjct: 1850 LFMLRNPVTIYNFLGMLMAIFGVFIYN 1876


>SB_703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 308 QVAWNRAGPLLLADGVLAWLQAVAAFSV 225
           +V WN+AGP L+   ++AW Q   A  V
Sbjct: 139 KVIWNQAGPQLMYGMLIAWGQWTVALVV 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.125    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,760,186
Number of Sequences: 59808
Number of extensions: 104629
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)