Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d08f
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_31583| Best HMM Match : Granulin (HMM E-Value=7.6)                  28   5.1  
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_17576| Best HMM Match : 7tm_1 (HMM E-Value=0.019)                   28   6.7  
SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027)                 27   8.8  
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
 Frame = +2

Query: 227  SRRETLIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAVQXXXXXXXXXXXXXXXGV 406
            S  E+L V  L  ++  +SS +NV+ K  L + P P+T+  VQ                V
Sbjct: 1589 SSSESLFVAILHRSFPAVSSTNNVITKRLLNKFPHPVTVAFVQVFSTALFMGPTLVLWRV 1648

Query: 407  -RSTRWPTNYWTRVLVPLAIAKLLTTLCSQVSIWKVPVSYAHT 532
             +++  P   + + +VPL+  K L  + + VSIWKVPVSYAHT
Sbjct: 1649 PKNSAIPKTTFYKFIVPLSFGKALAAVSAYVSIWKVPVSYAHT 1691


>SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 366 AAHSCTAVIVSGNGSSVNASLPTTLLAELNIYHAAHRKPTISVS 235
           A H   AV++S NG++ ++           IYH     PT   S
Sbjct: 66  ATHGTPAVLISNNGTNYSSQEFREFTKAWEIYHVTRNSPTPGTS 109


>SB_31583| Best HMM Match : Granulin (HMM E-Value=7.6)
          Length = 169

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = -3

Query: 480 VVRSLAIAKGTKTRVQ*F-VGHRVERTPHRASAGTLSEAA-AHSCTAVIVSGNGSSVNAS 307
           +V  LA+ +    R + F +G+ +E T +  S   L +   AHS T     G G ++ ++
Sbjct: 48  IVSKLAMERIDGVRARLFELGYTLESTMNDGSDTRLHQFHHAHSSTTPTGKGGGYTMEST 107

Query: 306 LPTTLLAELNIYHAAHR 256
           +     + L+ +H AHR
Sbjct: 108 MNDCSNSRLHQFHHAHR 124


>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 586 PKQYASQPRRPERSRRFHCVGIGDWHFPNGNLR 488
           P  + S+ RRP RSR +   GI     P+ ++R
Sbjct: 465 PNNWTSETRRPSRSRGYPSRGISTTKHPSRDIR 497


>SB_17576| Best HMM Match : 7tm_1 (HMM E-Value=0.019)
          Length = 210

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = -3

Query: 582 NSTRASPAVQRGVVAFTVWA*ETGTFQMETCEHSVVRSLAIAKGTKTRVQ*FVGHRVERT 403
           N+    P  ++G+V  T W     T +M  C     R  A  K TK  +   V H V RT
Sbjct: 65  NNAFVHPGGKQGIVLLTFWKKRHTTTEMSQC----ARLRARTKVTKMLILMTVIHTVCRT 120

Query: 402 PH 397
           P+
Sbjct: 121 PN 122


>SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027)
          Length = 379

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 202 KKRNGYKRLQARDTNSWLPVRSVVYVKFSQ*CRGQTGINRATISTNYDSGTAVC 363
           ++R   +R+   DT   +P+R+V    FS      TG     IST +   +A C
Sbjct: 142 RRRRFRRRIFGADTRLEIPIRAVRRTPFSSIVHISTGCTGTLISTRHVLTSAHC 195


>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2011

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -3

Query: 402  PHRASAGTLSEAAAHSCTAVIVSGNGSSVNASLPTTLLAELNIYHAAHRKPTISVSRLEP 223
            PH   + +   +  H CT++   G  ++V  ++  TL     + H  HR   + V++  P
Sbjct: 1036 PHVTQSVSRCCSVPHWCTSIAWIGCFATVLLAVSITLSQSFPVNHRLHRVQRLQVAQQSP 1095

Query: 222  L 220
            +
Sbjct: 1096 M 1096


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,623,720
Number of Sequences: 59808
Number of extensions: 412714
Number of successful extensions: 1261
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)