Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d07f
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 54 2e-08
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 52 5e-08
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 31 0.13
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 29 0.69
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 28 0.91
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 28 0.91
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces... 27 2.1
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 26 3.7
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 25 8.5
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 8.5
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal... 25 8.5
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 53.6 bits (123), Expect = 2e-08
Identities = 28/62 (45%), Positives = 42/62 (67%)
Frame = +2
Query: 404 IKLLLLGTGESGKTTIIKQMKILHVHGFSASERKEKIKHIKFNIHESIYEIVHSMSRLSI 583
IK+LLLG G+SGKTTI+KQM++L+ GFS RK+ I NI S+ ++ +M ++
Sbjct: 75 IKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLCLLLEAMDNSNV 134
Query: 584 AL 589
+L
Sbjct: 135 SL 136
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 52.4 bits (120), Expect = 5e-08
Identities = 32/85 (37%), Positives = 50/85 (58%)
Frame = +2
Query: 335 EDQEHSIEIDRQIKQWIKNYNGAIKLLLLGTGESGKTTIIKQMKILHVHGFSASERKEKI 514
E ++ + +I++QI+ K K+LLLG +SGK+TI KQ+KIL+ +GFS E I
Sbjct: 12 ESKKLNSKIEKQIENASKKDKKIYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTFI 71
Query: 515 KHIKFNIHESIYEIVHSMSRLSIAL 589
I+ N+ ES +V + + I L
Sbjct: 72 PVIRRNLLESAKTLVKIIVQKGINL 96
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 293 RYTMRLLPCMKGYDEDQEHSIEIDRQIKQWIKNYNGAIKLLLLGTGESGKTTIIKQM 463
+ + +L P D + +H++ Q+ + K KLLLLG +SGK T++ ++
Sbjct: 244 KVSQQLKPQKNTNDSNNDHTLLSQDQLIELSKLVKPRTKLLLLGPPKSGKKTLLSRL 300
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 28.7 bits (61), Expect = 0.69
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 473 HVHGFSASERKEKIKHIKFNIHESIYEIVHSMSRLSIALQNPR 601
H++GF S+R+E KH ++ E H RL AL NPR
Sbjct: 291 HLNGFQPSQRQEDYKHTMVDL---ATEFSH---RLKAALSNPR 327
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 28.3 bits (60), Expect = 0.91
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 247 RDLAYHPKYLKQLQCNNNYSRETPLILY 164
RDLAYH + L +++ N +++ LI++
Sbjct: 374 RDLAYHDEILSRMKLNEQLNKDAVLIIH 401
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +2
Query: 395 NGAIKLLLLGTGESGKTTIIKQMK----ILHVHGFSASERKEKIKHIKFNI 535
N +++L+LG +GKTTI+ ++K ++ + + K+IKFN+
Sbjct: 19 NKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNV 69
>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 244 DLAYHPKYLKQLQCNNNYSRETPL 173
DL P+ K L NN + +ETPL
Sbjct: 38 DLVQKPELSKNLSVNNEFLKETPL 61
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 404 IKLLLLGTGESGKTTIIK 457
+++LLLG +GKTTI+K
Sbjct: 17 VRVLLLGLDNAGKTTILK 34
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 395 NGAIKLLLLGTGESGKTTIIKQMK 466
N K+L LG +GKTT++ +K
Sbjct: 18 NKHAKMLFLGLDNAGKTTLLHMLK 41
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 335 EDQEHSIEIDRQIKQWIKNYNGAIKLLLLGTGESGKTTIIKQ 460
++Q + + + KQ+++ + L+LLG SGKTT I Q
Sbjct: 504 KEQREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQ 545
>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -2
Query: 253 MERDLAYHPKYLKQ---LQCNNNY 191
M+ D ++HPKYL + LQ +NY
Sbjct: 94 MDADFSHHPKYLPEFIKLQKEHNY 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,436
Number of Sequences: 5004
Number of extensions: 49796
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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