Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d07f
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530...    31   0.53 
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63...    31   0.70 
10_03_0043 - 7327303-7327419,7327815-7327901                           30   1.2  
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653...    28   6.5  
03_03_0224 + 15580944-15581036,15581630-15581770,15582385-155824...    28   6.5  
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553...    27   8.7  
02_05_0857 - 32278922-32279102,32280386-32280507,32280987-322811...    27   8.7  

>11_01_0656 -
           5301048-5301441,5301779-5301976,5302056-5302228,
           5302691-5302935,5303014-5303191,5303578-5303760,
           5303858-5303962,5304621-5304758,5304846-5305802
          Length = 856

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/49 (36%), Positives = 31/49 (63%)
 Frame = +2

Query: 407 KLLLLGTGESGKTTIIKQMKILHVHGFSASERKEKIKHIKFNIHESIYE 553
           KLLLLG   +G +TI KQ K L+   F+    +E++++IK  I  ++++
Sbjct: 444 KLLLLGPDGAGTSTIFKQAKYLYGTRFT----QEELENIKLIIQSNMFK 488


>06_01_0079 -
           633595-633985,634346-634543,634864-635036,635355-635599,
           635683-635860,636291-636473,636769-636873,637709-637846,
           637933-638925
          Length = 867

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/49 (34%), Positives = 31/49 (63%)
 Frame = +2

Query: 407 KLLLLGTGESGKTTIIKQMKILHVHGFSASERKEKIKHIKFNIHESIYE 553
           KLL+LG+  +G +TI KQ K+L+   F+    +E++  IK  I  ++++
Sbjct: 456 KLLILGSPGAGTSTIFKQAKLLYDTRFT----QEELDSIKLMIQSNMFK 500


>10_03_0043 - 7327303-7327419,7327815-7327901
          Length = 67

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 365 GLSQLSAPGLRRSLSCRVASAL--YIENLNINYPLFRLVDGTRSRLPSKISQTIT 207
           G+  L  P ++   + +V +AL  Y+  +NI+  L   V+GT    P+ IS+TIT
Sbjct: 13  GIFTLLLPCVQLMTNIQVLTALNWYLTAVNIHQVLAASVEGTHDMPPTPISRTIT 67


>11_04_0305 -
           16162063-16162096,16162282-16164365,16165283-16165351,
           16168317-16169288,16169548-16169650,16170427-16170509
          Length = 1114

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 332 DEDQEHSIEIDRQIKQWIKNYNGAIKLLLLGTGESGKTTIIKQM 463
           +ED    +++    K+ I   N ++ L ++G G  GKTT+ K +
Sbjct: 216 EEDTSALVKLLTDDKETIHAENNSLLLAIVGVGGIGKTTLAKNI 259


>03_03_0224 +
           15580944-15581036,15581630-15581770,15582385-15582493,
           15582598-15582659,15583704-15583807,15584058-15584160
          Length = 203

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/25 (36%), Positives = 21/25 (84%)
 Frame = +2

Query: 410 LLLLGTGESGKTTIIKQMKILHVHG 484
           +L+LG  ++GKTT+++++K +++ G
Sbjct: 20  VLILGVDKAGKTTLLEKIKSIYLKG 44


>09_02_0569 -
           10752756-10753164,10753229-10753644,10754149-10755349,
           10756770-10756991,10757615-10757767,10757883-10758034,
           10758142-10758222,10758353-10758598,10759394-10759516
          Length = 1000

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 30/98 (30%), Positives = 42/98 (42%)
 Frame = +2

Query: 302 MRLLPCMKGYDEDQEHSIEIDRQIKQWIKNYNGAIKLLLLGTGESGKTTIIKQMKILHVH 481
           M L P + G DE ++   +I   IKQ      G     + G G SGKTT++KQ+  +   
Sbjct: 450 MPLPPYIVGQDEYKD---KIVGSIKQGTTGTIG-----ICGMGGSGKTTLLKQLNNI--- 498

Query: 482 GFSASERKEKIKHIKFNIHESIYEIVHSMSRLSIALQN 595
            FS +    +  H+       IY  V     L   LQN
Sbjct: 499 -FSCAAETHEFDHV-------IYVEVSQQQNLETVLQN 528


>02_05_0857 -
           32278922-32279102,32280386-32280507,32280987-32281101,
           32285455-32285858
          Length = 273

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 253 MERDLAYHPKYLKQLQCNNNY 191
           +ER L YHP+Y K++ C  +Y
Sbjct: 151 LERLLPYHPQYEKKIGCGIDY 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,609,762
Number of Sequences: 37544
Number of extensions: 277506
Number of successful extensions: 677
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)