Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d07f
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26300.1 68415.m03156 guanine nucleotide binding protein (G-p...    59   2e-09
At4g34390.1 68417.m04885 extra-large guanine nucleotide binding ...    37   0.012
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    35   0.036
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    35   0.036
At5g55360.1 68418.m06898 long-chain-alcohol O-fatty-acyltransfer...    34   0.083
At2g01460.1 68415.m00069 phosphoribulokinase/uridine kinase fami...    32   0.34 
At3g51990.1 68416.m05703 protein kinase family protein contains ...    31   0.59 
At5g63050.1 68418.m07910 expressed protein                             30   1.0  
At5g51420.1 68418.m06375 long-chain-alcohol O-fatty-acyltransfer...    29   2.4  
At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong...    29   2.4  
At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong...    29   3.1  
At5g40050.1 68418.m04858 F-box family protein contains F-box dom...    28   4.1  
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl...    28   4.1  
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila...    27   9.6  
At1g29010.1 68414.m03548 expressed protein ; expression supporte...    27   9.6  

>At2g26300.1 68415.m03156 guanine nucleotide binding protein
           (G-protein) alpha-1 subunit / GP-alpha-1 (GPA1)
           identical to SP|P18064 Guanine nucleotide-binding
           protein alpha-1 subunit (GP-alpha-1) {Arabidopsis
           thaliana}
          Length = 383

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 31/76 (40%), Positives = 48/76 (63%)
 Frame = +2

Query: 335 EDQEHSIEIDRQIKQWIKNYNGAIKLLLLGTGESGKTTIIKQMKILHVHGFSASERKEKI 514
           ++   + EI+R+I+Q  K      KLLLLG GESGK+TI KQ+K+L   GF   E K  +
Sbjct: 16  DENTQAAEIERRIEQEAKAEKHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYV 75

Query: 515 KHIKFNIHESIYEIVH 562
             I  N++++I +++H
Sbjct: 76  PVIHANVYQTI-KLLH 90


>At4g34390.1 68417.m04885 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 861

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +2

Query: 407 KLLLLGTGESGKTTIIKQMKILHVHGFSASERKEKIKH-IKFNIHESIYEIVHSMSRLSI 583
           KLLL+G+ + G TTI KQ + L+   FS  +R E+IK  I+ N++  +  ++ +  R   
Sbjct: 464 KLLLIGSEKGGATTIYKQARSLYNVSFSLEDR-ERIKFIIQTNLYTYLAMVLEAHERFEK 522

Query: 584 ALQN 595
            + N
Sbjct: 523 EMSN 526


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 20/48 (41%), Positives = 29/48 (60%)
 Frame = +2

Query: 407 KLLLLGTGESGKTTIIKQMKILHVHGFSASERKEKIKHIKFNIHESIY 550
           KLLLLG   SG +TI KQ K L+ + FS     E+++ IK  +  ++Y
Sbjct: 432 KLLLLGIEGSGTSTIFKQAKFLYGNKFSV----EELQDIKLMVQSNMY 475


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 20/48 (41%), Positives = 29/48 (60%)
 Frame = +2

Query: 407 KLLLLGTGESGKTTIIKQMKILHVHGFSASERKEKIKHIKFNIHESIY 550
           KLLLLG   SG +TI KQ K L+ + FS     E+++ IK  +  ++Y
Sbjct: 432 KLLLLGIEGSGTSTIFKQAKFLYGNKFSV----EELQDIKLMVQSNMY 475


>At5g55360.1 68418.m06898 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase similarity to wax synthase
           wax synthase - Simmondsia chinensis, PID:g5020219
           similar to wax synthase [gi:5020219] from Simmondsia
           chinensis
          Length = 342

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = -3

Query: 555 ISYIDSWMLNFICLIFSFLS--LAENPCTCNIFICFMIVVFPLSPV--PNSRSFMAPL 394
           +++  SW+ NF  ++FSF    L+  P T + FIC  I  FP+ P   PN +++  P+
Sbjct: 62  MAFFLSWLANFKLILFSFDQGPLSPLPRTLSRFIC--ITCFPIKPQQNPNIQNYKIPI 117


>At2g01460.1 68415.m00069 phosphoribulokinase/uridine kinase family
           protein contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 723

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
 Frame = +2

Query: 290 FRYTMRLLPCMKGYDEDQEHSIEIDRQIKQWIKNYNGAIKLLLLGTGESGKTTIIKQM-- 463
           FR  MRL+P    YD D+   + + + I+  ++N    + + + G   SGKT++  +M  
Sbjct: 484 FRDNMRLVPMPDSYDLDRGLLLSV-QAIQALLENKGPPVIVGIGGPSGSGKTSLAHKMAN 542

Query: 464 ----KILHVHGFSASERKEKIKHIKFN 532
               +++ +  +  SE+ +  KH  F+
Sbjct: 543 IVGCEVVSLESYFKSEQVKDFKHDDFS 569


>At3g51990.1 68416.m05703 protein kinase family protein contains
           protein kinase domain, PF00069
          Length = 362

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = +2

Query: 452 IKQMKILHVHGFSASERKEKIKHIKFNIHESIYEIVHS 565
           I+  + +++ GFSA   KE +  ++F  + S+Y+++HS
Sbjct: 108 IRSPRFVNLLGFSADNSKEPLLVVEFMGNGSLYDVIHS 145


>At5g63050.1 68418.m07910 expressed protein
          Length = 345

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 19  FSESYRIIF*VFCYEYQREFHLNFCLSPLNFSFIIKNLRQ-SD*YCICFNTKLKVFLDYN 195
           F  ++  ++ +   E  +E    + + PL  +  IK  +     Y  CFN  +K+  +  
Sbjct: 208 FVPAFLAVYAICGAEVTKELSPMWVVGPLIIALYIKMFQGLCSLYAFCFNQTIKMIRNLP 267

Query: 196 CYYIVIV*DILDGK 237
            YY+V    I DGK
Sbjct: 268 SYYLVAYQYIADGK 281


>At5g51420.1 68418.m06375 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase  wax synthase - Simmondsia
           chinensis, PID:g5020219  similar to wax synthase
           [gi:5020219] from Simmondsia chinensis
          Length = 435

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -3

Query: 540 SWMLNFICLIFSFLSLAENPCTCNI--FICFMIVVFPLSPVPNSRSF 406
           SW+ NF  ++FSF      P   N+  FICF      L   P  R +
Sbjct: 67  SWLANFKLILFSFNQGPLFPLPSNLTRFICFACFPIKLQQNPKRRDY 113


>At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong
           similarity to pyruvate decarboxylase 1 [Vitis vinifera]
           GI:10732644; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 603

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 371 IKQWIKNYNGAIKLLLLGTGESGKTTIIKQMKILHVHGFSASERKEKIKHIKFNIH--ES 544
           IK W  NY G +  +  G G+   T +  + +++     + +E+K+ +  I+  +H  ++
Sbjct: 524 IKNW--NYTGLVDAIHNGEGKCWTTKVRYEEELVEAIKTATTEKKDSLCFIEVIVHKDDT 581

Query: 545 IYEIVHSMSRLSIALQNP 598
             E++   SR+S A   P
Sbjct: 582 SKELLEWGSRVSAANGRP 599


>At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong
           similarity to pyruvate decarboxylase 1 [Vitis vinifera]
           GI:10732644; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 592

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +2

Query: 371 IKQWIKNYNGAIKLLLLGTGESGKTTIIKQMKILHVHGFSASERKEKIKHIKFNIH--ES 544
           IK W  NY G +  +  G G+   T +  + +++     +  E+K+ +  I+  +H  ++
Sbjct: 513 IKNW--NYTGLVDAIHNGEGKCWTTKVRYEEELVEAINTATLEKKDSLCFIEVIVHKDDT 570

Query: 545 IYEIVHSMSRLSIALQNP 598
             E++   SR+S A   P
Sbjct: 571 SKELLEWGSRVSAANGRP 588


>At5g40050.1 68418.m04858 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 415

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +2

Query: 395 NGAIKLLLLGTGESGKTTIIKQMKILHVHGFSASERKEKIKHIKFNIHESIYEIVHSMSR 574
           N  +  L LGT      +  + ++ L++H     +R E+     FNIH + + I H++ +
Sbjct: 157 NNTLVKLTLGTELCLGRSPWENLEELYIHHIYIEDRDEE-----FNIHTAPHYIAHNIKK 211

Query: 575 LSIALQN 595
           L++   N
Sbjct: 212 LTVCYNN 218


>At1g17220.1 68414.m02098 translation initiation factor IF-2,
            chloroplast, putative similar to SP|P57997|IF2C_PHAVU
            Translation initiation factor IF-2, chloroplast precursor
            (PvIF2cp) {Phaseolus vulgaris}
          Length = 1026

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
 Frame = +2

Query: 338  DQEHSIEIDRQIKQWIKNYNGAIKLLLLGTGESGKTTI-IKQMKILHVHGF----SASER 502
            D + SIE  RQ  Q +   N  +K LL  TG+   + + +       V GF    S S +
Sbjct: 818  DVQGSIEAVRQALQVLPQENVTLKFLLQATGDVSNSDVDLASASEAIVFGFNVKASGSVK 877

Query: 503  K-EKIKHIKFNIHESIYEIV 559
            K  + K ++  ++  IYE++
Sbjct: 878  KAAENKGVEIRLYRVIYELI 897


>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
           to D-E-A-D box protein [Drosophila melanogaster]
           GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 512

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 287 LNINYPLFRLVDGTRSRLPSKI 222
           L++++PLF    G+R RLP K+
Sbjct: 279 LDLHHPLFMTTGGSRYRLPEKL 300


>At1g29010.1 68414.m03548 expressed protein ; expression supported
           by MPSS
          Length = 220

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 400 CHKTSAIGYGGEREDNNHKT 459
           C KTS++ YG   +D+N+ +
Sbjct: 2   CSKTSSVSYGNREDDDNYSS 21


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,350,836
Number of Sequences: 28952
Number of extensions: 243788
Number of successful extensions: 634
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)