Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d06r
         (719 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q96K17 Cluster: Transcription factor BTF3 homolog 4; n=...    36   1.3  
UniRef50_UPI0000D9B4C6 Cluster: PREDICTED: basic transcription f...    34   3.1  
UniRef50_Q6A1N2 Cluster: Transcription factor BTF3; n=1; Euplote...    33   5.4  
UniRef50_Q8YTK6 Cluster: Alr2711 protein; n=5; Cyanobacteria|Rep...    33   9.4  

>UniRef50_Q96K17 Cluster: Transcription factor BTF3 homolog 4; n=59;
           Eukaryota|Rep: Transcription factor BTF3 homolog 4 -
           Homo sapiens (Human)
          Length = 158

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -3

Query: 717 EEDDEVPNLVGNFDEASK 664
           EEDD+VP+LV NFDEASK
Sbjct: 137 EEDDDVPDLVENFDEASK 154


>UniRef50_UPI0000D9B4C6 Cluster: PREDICTED: basic transcription
           factor 3 isoform 1; n=4; Eutheria|Rep: PREDICTED: basic
           transcription factor 3 isoform 1 - Macaca mulatta
          Length = 168

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -3

Query: 717 EEDDEVPNLVGNFDEASK 664
           ++DDEVP+LV NFDEASK
Sbjct: 147 DDDDEVPDLVENFDEASK 164


>UniRef50_Q6A1N2 Cluster: Transcription factor BTF3; n=1; Euplotes
           vannus|Rep: Transcription factor BTF3 - Euplotes vannus
          Length = 157

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = -3

Query: 717 EEDDEVPNLVGNFDEASKQ 661
           ++DD+VP LVGNF++ASK+
Sbjct: 138 DDDDDVPELVGNFEDASKK 156


>UniRef50_Q8YTK6 Cluster: Alr2711 protein; n=5; Cyanobacteria|Rep:
           Alr2711 protein - Anabaena sp. (strain PCC 7120)
          Length = 426

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 22/56 (39%), Positives = 28/56 (50%)
 Frame = -1

Query: 341 FLIDHQPFQHCGILILK*ALDKCYKPTVEKLIQNVLKLTLNS*GYECIKIKEAFFE 174
           FLI H+  QHC I+ +   L  C  PTV   +  V    LNS G E ++I    FE
Sbjct: 134 FLIQHES-QHCEIITMVLELLNCQLPTVNCQLSTVNHQQLNSVG-EMVEIPAGEFE 187


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,772,371
Number of Sequences: 1657284
Number of extensions: 10162633
Number of successful extensions: 18304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18300
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)