Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d06r
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          31   1.2  
SB_3341| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -3

Query: 717 EEDDEVPNLVGNFDEASK 664
           +EDDEVP LV NFDE SK
Sbjct: 10  DEDDEVPELVENFDEPSK 27


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 575 SVFL--SALVSDXXXXXXXXXXXLVTTSLASCFEASSKLPTRLGTSSSS 715
           SVFL  S+ +SD           L ++SL S F  SS LP+   TSSSS
Sbjct: 575 SVFLTSSSSLSDFLTSSSSLSVFLTSSSLPSDFLTSSSLPSDFLTSSSS 623



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 575 SVFL--SALVSDXXXXXXXXXXXLVTTSLASCFEASSKLPTRLGTSSSS 715
           SVFL  S+L SD           L ++S  S F  SS LP+   TSSSS
Sbjct: 595 SVFLTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSS 643



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 587 SALVSDXXXXXXXXXXXLVTTSLASCFEASSKLPTRLGTSSSS 715
           S+L SD           L ++S  S F  SS LP+   TSSSS
Sbjct: 631 SSLPSDFLTSSSSLSDFLTSSSSLSVFPTSSSLPSDFLTSSSS 673



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 587  SALVSDXXXXXXXXXXXLVTTSLASCFEASSKLPTRLGTSSSS 715
            S+L SD           L ++S  S F  SS LP+   TSSSS
Sbjct: 1226 SSLPSDFLTSSSSLSDFLTSSSSLSVFPTSSSLPSDFLTSSSS 1268



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 587 SALVSDXXXXXXXXXXXLVTTSLASCFEASSKLPTRLGTSSSS 715
           S+L SD           L ++S  S F  SS LP+   TSSSS
Sbjct: 866 SSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSS 908



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 587  SALVSDXXXXXXXXXXXLVTTSLASCFEASSKLPTRLGTSSSS 715
            S+L+SD             ++SL S F  SS LP+   TSSSS
Sbjct: 1176 SSLLSDFLTSSSSLSVFPTSSSLPSDFLTSSSLPSDFLTSSSS 1218



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 587  SALVSDXXXXXXXXXXXLVTTSLASCFEASSKLPTRLGTSSSS 715
            S+L SD           L ++S  S F  SS LP+   TSSSS
Sbjct: 1196 SSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSS 1238



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 587  SALVSDXXXXXXXXXXXLVTTSLASCFEASSKLPTRLGTSSS 712
            S+L SD           L ++S  S F  SS LP+   TSSS
Sbjct: 896  SSLPSDFLTSSSSLSDFLTSSSSLSVFPTSSSLPSDFVTSSS 937


>SB_3341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 459 YTQERNEIKVKIILLRHRWLRKPLTCR*AN*NYTCG*FNQF 581
           YT E +E K K   L  +W+   L+   AN  Y CG  N F
Sbjct: 330 YTPEVSEEKRKRRRLERKWVSTGLSTDRANYAYQCGVVNNF 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,347,188
Number of Sequences: 59808
Number of extensions: 324579
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)