Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d06f
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264...   129   2e-30
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53...   127   6e-30
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095...    82   2e-16
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629...    29   1.8  
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567...    28   5.4  
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965...    27   7.2  

>10_08_0411 -
           17725661-17725842,17726066-17726104,17726379-17726435,
           17726524-17726672,17727195-17727262,17727796-17727798
          Length = 165

 Score =  129 bits (311), Expect = 2e-30
 Identities = 63/125 (50%), Positives = 81/125 (64%)
 Frame = +3

Query: 150 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 329
           MN +KLKK+   VR GGKG+ RRKKK VH T  TDD           VNTIPGIEEVN+ 
Sbjct: 2   MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIF 61

Query: 330 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSV 509
           K+D  VI F NPK QAS+ ANT+ ++G  + K+  ++LP I++QLGPD L+ L+R+A   
Sbjct: 62  KDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNLRRLAEQF 120

Query: 510 AAPKP 524
               P
Sbjct: 121 QKQAP 125


>03_01_0067 -
           538929-539143,539306-539344,539579-539635,539727-539875,
           540298-540365,542009-542093,542185-542246,542612-542700,
           543034-543088,544127-544252,544477-544576,544697-545499
          Length = 615

 Score =  127 bits (306), Expect = 6e-30
 Identities = 62/125 (49%), Positives = 80/125 (64%)
 Frame = +3

Query: 150 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 329
           MN +KLKK+   VR GGKG+ RRKKK VH T  TDD           VN IPGIEEVN+ 
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 500

Query: 330 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSV 509
           K+D  VI F NPK QAS+ ANT+ ++G  + K+  ++LP I++QLGPD L+ L+R+A   
Sbjct: 501 KDD-VVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQF 559

Query: 510 AAPKP 524
               P
Sbjct: 560 QKQVP 564


>03_06_0698 +
           35608666-35608709,35608810-35608958,35609493-35609531,
           35610024-35610163,35611130-35611244,35611281-35611399,
           35611413-35611979
          Length = 390

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 50/108 (46%), Positives = 59/108 (54%)
 Frame = +3

Query: 186 VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNP 365
           VR GGKGT RRKKK VH T  TDD           VNTIP IEEVN+ K+D  VI F NP
Sbjct: 5   VRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEEVNIFKDD-LVIQFVNP 63

Query: 366 KAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSV 509
                              K+  ++LPGI++QLGPD +  LKRIA  +
Sbjct: 64  -------------------KELQDVLPGIINQLGPDNMEHLKRIAEEM 92


>08_02_0850 +
           21862110-21862394,21862555-21862723,21862901-21862965,
           21863632-21863905,21863998-21864145,21864237-21864346,
           21864440-21864495,21864568-21864624,21864733-21864876,
           21865304-21865351
          Length = 451

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 481 FKPSGPSWLRIPGSISVVCLFSPCPVIANVFAAS 380
           F P GP W + PGS +     +PCP  A++F++S
Sbjct: 207 FYPLGPVW-QPPGSSTSKAPSAPCPPSASLFSSS 239


>12_01_0667 +
           5674322-5674393,5674455-5675159,5676051-5676087,
           5676238-5676335,5676452-5676475
          Length = 311

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +3

Query: 87  NSVIKK-CPVLTLTQFTLKNSRMNSEKLKKLQS--QVRIGGKGTPRRKKKVVHVTAAT 251
           ++V+++ C  + + +  LK      E+LKKL    + R GG G P R K  +H+ +A+
Sbjct: 241 DAVVQRFCQEVGVKRRVLKYGSGAPEELKKLDFFWERRGGGGGNPLRNKMKIHLASAS 298


>04_04_0677 +
           27195264-27195291,27196034-27196271,27196350-27196500,
           27196578-27196972,27197270-27197339,27197414-27197696,
           27197972-27198297,27198409-27199368
          Length = 816

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 307 PGIVFTDNFLSDDCSFLSSVAAVT*TTFFLRLGVPLPPMR 188
           PG+VF   +  D   FL +V  V        +GVP PP R
Sbjct: 670 PGLVFDAGY-RDYLQFLCAVPGVDDAAVLRAVGVPCPPSR 708


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,250,000
Number of Sequences: 37544
Number of extensions: 289378
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)