Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d06f
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...   165   2e-41
U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   2.8  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score =  165 bits (401), Expect = 2e-41
 Identities = 80/131 (61%), Positives = 98/131 (74%), Gaps = 3/131 (2%)
 Frame = +3

Query: 141 NSRMNSEKLKKLQSQ---VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGI 311
           +S+  +E++KKLQ+Q   VRIGGKGTPRRKKKV+H TAA DD           V  IPGI
Sbjct: 2   DSKAIAERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLKKLSVTNIPGI 61

Query: 312 EEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLK 491
           EEVNMIK+DGTVIHFNNPK Q S+ ANTF++TG  +NKQ TEMLPGIL+QLGP+ L  LK
Sbjct: 62  EEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHLK 121

Query: 492 RIASSVAAPKP 524
           ++A++V    P
Sbjct: 122 KLANNVTKLGP 132


>U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical
           protein D2092.5 protein.
          Length = 908

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 520 LGAATLDAILFSRFKPSGPSWLRIPGSI-SVVCLFSPC-PVIANVFAASDACAFGLLKCI 347
           LG  +LDA+   RF+   P+WL I  +  S+      C   IAN  AA  +  F    C+
Sbjct: 50  LGMVSLDAMTGFRFELLWPTWLMIRAAAESIQMRNQHCVTTIANPTAARFSVLF---ICV 106

Query: 346 TVPSSLIIF 320
           T  S LI +
Sbjct: 107 TATSDLICY 115


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 266 AVIAQKVVSEHNSWHRRGKYDQRGR 340
           ++I+  V + H++WH  G  D RGR
Sbjct: 34  SIISGDVNAHHSAWHSEGSEDTRGR 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,179,939
Number of Sequences: 27780
Number of extensions: 254164
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)