Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d06f
(534 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73230.1 68414.m08475 nascent polypeptide-associated complex ... 128 3e-30
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ... 126 1e-29
At2g43110.1 68415.m05352 expressed protein 33 0.16
At5g47690.1 68418.m05887 expressed protein 32 0.28
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-... 28 4.5
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 28 4.5
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 28 4.5
At4g22780.1 68417.m03288 ACT domain-containing protein (ACR7) lo... 27 5.9
>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
(NAC) domain-containing protein similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain
Length = 165
Score = 128 bits (308), Expect = 3e-30
Identities = 64/125 (51%), Positives = 81/125 (64%)
Frame = +3
Query: 150 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 329
MN EKL K+ + VR GGKGT RRKKK VH T TDD VN+IP IEEVN+
Sbjct: 1 MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60
Query: 330 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSV 509
K+D VI F NPK QAS+AANT+ ++G + K+ ++LP I+SQLGPD L+ LK++A
Sbjct: 61 KDD-VVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQF 119
Query: 510 AAPKP 524
P
Sbjct: 120 QKQAP 124
>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
(NAC) domain-containing protein / BTF3b-like
transcription factor, putative similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain; identical to cDNA
BTF3b-like factor GI:5912423
Length = 165
Score = 126 bits (303), Expect = 1e-29
Identities = 62/117 (52%), Positives = 80/117 (68%)
Frame = +3
Query: 150 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 329
MN EKL K+ + VR GGKGT RRKKK VH T TDD VN+IP IEEVN+
Sbjct: 1 MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60
Query: 330 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA 500
K+D VI F NPK QAS+AANT+ ++G + K+ ++LP I+SQLGPD ++ LK++A
Sbjct: 61 KDD-VVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLA 116
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 32.7 bits (71), Expect = 0.16
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3
Query: 84 LNSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA 245
L+S+ K+CP + L LK E++ L+ +V IG GTP R KK+V + A
Sbjct: 172 LHSLTKQCPAVKLFSKHLKVE----EQVSLLKKRVNIGS-GTPNRIKKLVDIEA 220
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 31.9 bits (69), Expect = 0.28
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 488 QSVQAVGSELAEDTREHLCGLLILPVSGNRERVR-GQRRLCLRVVK 354
Q++ V E +ED +EHL +L+ + NR VR RRL ++V++
Sbjct: 172 QNIMIVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIE 217
>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
/ HD-ZIP transcription factor 13 identical to homeobox
gene 13 protein (GP:12325190) [Arabidopsis thaliana]
Length = 294
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 123 TQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 230
+Q K R+N E++K L+ +G K P RK ++
Sbjct: 80 SQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQL 115
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +1
Query: 214 DARRRLFTLLRPQMTKNCS--HRSKSC 288
+++RRL T+L+P+M K C H S +C
Sbjct: 948 ESQRRLHTVLKPKMAKLCQVLHLSDAC 974
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +1
Query: 214 DARRRLFTLLRPQMTKNCS--HRSKSC 288
+++RRL T+L+P+M K C H S +C
Sbjct: 948 ESQRRLHTVLKPKMAKLCQVLHLSDAC 974
>At4g22780.1 68417.m03288 ACT domain-containing protein (ACR7) low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 449
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +3
Query: 210 PRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGI--EEVNMIKEDGTVIHFNNPKAQASL 383
P R++ + + AA + PG+ E +++E+G I + S+
Sbjct: 302 PERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRILRENGLNIARAEISTKDSI 361
Query: 384 AANTFAITGHGENKQTTEMLPGILSQLGPDGLN 482
A N F +T N E++ I ++G D L+
Sbjct: 362 ARNVFYVTDANGNLIDPEIIKSIREKIGIDDLS 394
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,295,314
Number of Sequences: 28952
Number of extensions: 223781
Number of successful extensions: 609
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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