Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d03r
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 388 e-109
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 70 3e-13
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 64 3e-11
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 38 0.001
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.31
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 0.94
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 5.0
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 25 8.8
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 8.8
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 388 bits (955), Expect = e-109
Identities = 188/233 (80%), Positives = 210/233 (90%)
Frame = -1
Query: 753 FRDQEGQDLLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKG 574
FRD EGQD+LLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG MQERITTTKKG
Sbjct: 289 FRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTKKG 348
Query: 573 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI 394
SITSVQA+YVPADDLTDPAPATTFAHLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP I
Sbjct: 349 SITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDPRI 408
Query: 393 IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAE 214
+G EHYN+A VQ++LQ+YKSLQDIIAILGMDELSE DKLTV RARK+QRFLSQPF VAE
Sbjct: 409 LGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQRFLSQPFAVAE 468
Query: 213 VFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAK 55
VFTG G+LV L++TI+ F +IL G +D LPE AFYMVG I++ V KA+ +A+
Sbjct: 469 VFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 70.1 bits (164), Expect = 3e-13
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 7/178 (3%)
Frame = -1
Query: 744 QEGQDLLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGS 571
Q + +L + ++ + A EVSA +P GY + TD+ T+ ER + GS
Sbjct: 266 QTEKHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGS 325
Query: 570 ITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI- 394
IT + + +P DD+T P P T + + R + IYP ++ L S SR+M I
Sbjct: 326 ITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIG 385
Query: 393 ---IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 232
+H +V+ + + + + +++G + LS+ED+L + K ++ F+SQ
Sbjct: 386 EGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFISQ 443
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 63.7 bits (148), Expect = 3e-11
Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Frame = -1
Query: 753 FRDQEGQDLLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI------ 592
+RDQ G+++ + D+ R+ +A E+S L +P+ GY L + + ER
Sbjct: 345 YRDQ-GKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYERAGRARCL 403
Query: 591 -TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 415
+ ++G+++ V A+ P D +DP + T + L + +A+ +P+++ S S
Sbjct: 404 GSPDREGTVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSYS 463
Query: 414 RIMDPNIIGAEH----YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKI 250
+ ++ E +N R +++I+Q S+ +II ++G LSE DK+T+ A I
Sbjct: 464 KYINALQPWYEERVPGFNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGII 523
Query: 249 QR-FLSQ 232
+ FL Q
Sbjct: 524 KNDFLQQ 530
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 38.3 bits (85), Expect = 0.001
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 4/179 (2%)
Frame = -1
Query: 753 FRDQEGQDLLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK- 577
FRD G+ L+ D++ + A ++S LL R P Y + + ER
Sbjct: 285 FRDN-GKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSPK 343
Query: 576 ---GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 406
GS+T++ I D++ P + D L + GI PA++ S SR+
Sbjct: 344 HGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSRVG 403
Query: 405 DPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQP 229
+ A VA ++ L Y+ + A G D L + T+ R ++ L QP
Sbjct: 404 SAAQVKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLTELLKQP 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 561 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 388
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 387 AEHYNVARGVQKILQDYKSL 328
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.94
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -1
Query: 603 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 481
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 585 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 448
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/54 (18%), Positives = 28/54 (51%)
Frame = +1
Query: 493 QVSKSGSWSRICQVISWYINSLYRCDGTFLGGGNSFLHSTHVSSQSRLISYSRW 654
++S++ S+ ++++ Y+ + D F+G SF+ +T +++ + W
Sbjct: 302 RISRADSYDHDIRMLAKYLQEVTLMDEIFIGAHISFIAATAYYLSMQMLGHLDW 355
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 176 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 301
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,591
Number of Sequences: 5004
Number of extensions: 68756
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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