Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d03r
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 368 e-102
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 180 8e-46
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 67 2e-11
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-11
SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 38 0.007
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94) 29 3.1
SB_7319| Best HMM Match : SRCR (HMM E-Value=0) 29 4.1
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_38678| Best HMM Match : C2 (HMM E-Value=3.1e-29) 28 7.1
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085) 28 7.1
SB_58895| Best HMM Match : SRCR (HMM E-Value=0) 28 9.4
SB_42811| Best HMM Match : SRCR (HMM E-Value=0) 28 9.4
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 28 9.4
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 368 bits (905), Expect = e-102
Identities = 177/199 (88%), Positives = 187/199 (93%)
Frame = -1
Query: 651 SAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS 472
+ VGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS
Sbjct: 247 AGVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS 306
Query: 471 RAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDEL 292
R IAELGIYPAVDPLDSTSRIMDPNI+G EHY +ARGVQKILQDYKSLQDIIAILGMDEL
Sbjct: 307 RGIAELGIYPAVDPLDSTSRIMDPNIVGTEHYEIARGVQKILQDYKSLQDIIAILGMDEL 366
Query: 291 SEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVA 112
SE+DKLTVARARKIQ+FLSQPF AEVFTGH GKLVPL+ETI GF+KIL G+ DHLPEVA
Sbjct: 367 SEDDKLTVARARKIQKFLSQPFVTAEVFTGHDGKLVPLKETIVGFNKILKGELDHLPEVA 426
Query: 111 FYMVGPIEEVVAKADTLAK 55
FYM+GPIEE VAKAD LA+
Sbjct: 427 FYMIGPIEEAVAKADRLAE 445
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 180 bits (439), Expect = 8e-46
Identities = 85/98 (86%), Positives = 94/98 (95%)
Frame = -1
Query: 747 DQEGQDLLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSI 568
+ +G+D+L F+DNIFRFTQAGSEVSALLGR+PSAVGYQPTLAT+MG MQERIT+TKKGSI
Sbjct: 140 EAQGKDVLFFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGAMQERITSTKKGSI 199
Query: 567 TSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAEL 454
TSVQA+YVPADDLTDPAPATTFAHLDATTVLSR IAEL
Sbjct: 200 TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAEL 237
>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 475
Score = 66.9 bits (156), Expect = 2e-11
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 14/218 (6%)
Frame = -1
Query: 753 FRDQEGQDLLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI------ 592
FRD G + + D+ R+ +A E+S L +P+ GY L + + ER
Sbjct: 195 FRDM-GHHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVSCL 253
Query: 591 -TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 415
++GS+T V A+ P D +DP + T + L + +A+ +P+++ L S S
Sbjct: 254 GNPQREGSVTIVGAVSPPGGDFSDPVTSATLNIVQVFWGLDKKLAQRKHFPSINWLISYS 313
Query: 414 RIM-------DPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARAR 256
+ M + N E + V++ILQ+ + L +I+ ++G L+E DK+T+
Sbjct: 314 KYMRALDDYYEKNY--PEFVALRTKVKEILQEEEDLSEIVQLVGKGSLAESDKITL---- 367
Query: 255 KIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILA 142
++ + + F +T + K P +T+ S I+A
Sbjct: 368 EVAKLIKDDFLQQNGYTPY-DKFCPFYKTVGMLSNIVA 404
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 66.9 bits (156), Expect = 2e-11
Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Frame = -1
Query: 729 LLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQ 556
+L+ + ++ + +A EVSA +P G+ + TD+ T+ ER + GSIT +
Sbjct: 211 VLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATVYERAGRVEGRNGSITQIP 270
Query: 555 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IG 388
+ +P DD+T P P T + + R + IYP ++ L S SR+M I
Sbjct: 271 ILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTR 330
Query: 387 AEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFL 238
+H +V+ + K +Q + A++G + L+ ED L + K ++ L
Sbjct: 331 KDHSDVSNQLYANYAIGKDVQAMKAVVGEEALTSEDLLYLEFLTKFEKNL 380
>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 313
Score = 38.3 bits (85), Expect = 0.007
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Frame = -1
Query: 753 FRDQEGQDLLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERIT----- 589
FRD+ G+D L+ D++ + A ++S LL R P Y + + ER +
Sbjct: 49 FRDR-GEDALIVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERASRVSEE 107
Query: 588 ----------TTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 439
T K GS+T++ I A D++ P + D L A+ GI PA
Sbjct: 108 YVEKFTNGAVTGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLESAMFNSGIRPA 167
Query: 438 VDPLDSTSRI 409
V+ S SR+
Sbjct: 168 VNAGISVSRV 177
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 35.5 bits (78), Expect = 0.047
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Frame = -1
Query: 753 FRDQEGQDLLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK- 577
FRD G+ L+ D++ + A ++S LL R P Y + + ER
Sbjct: 206 FRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDS 264
Query: 576 ---GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 409
GS+T++ I A D++ P + D L + GI PA++ S SR+
Sbjct: 265 NGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRV 323
>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 170 VSSSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSSIPKIAI 319
+S + +L AC +N S T C N+ + +A N+S + + + I++
Sbjct: 585 MSENSLNLTACVINISMTQAACMTNISVTQAACVTNISMTQAACVTNISM 634
>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
Length = 1047
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -1
Query: 363 GVQKILQDYKSLQDII---AILGMDELSEEDKLTVARARKIQRFLSQPFQVAEV 211
G QK L YK QD++ A + ++D + +A A+KI F S ++A +
Sbjct: 372 GPQKYLNTYKKYQDLLNNKAETDVQAFLQDDPVLLALAKKIDEFQSLSREIASL 425
>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
Length = 957
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Frame = +1
Query: 424 VKRIHSWVDTQFSNGSGEYSGSIQVSKSGSWSRICQVISWYINSLYRCDGTFLGGGN--S 597
V R S V + G Y G++QV G W IC SW IN R LG G S
Sbjct: 219 VPRETSTVSVRLIGGGNPYQGTVQVF-YGGWGTICD-DSWDINDA-RVICRMLGYGQAVS 275
Query: 598 FLHSTHVSSQS 630
H H S
Sbjct: 276 APHGAHFGQGS 286
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 445 VDTQFSNGSGEYSGSIQVSKSGSWSRICQVISWYI 549
V + NG+ SG +Q+ SG+W +C I+W +
Sbjct: 765 VPVRLINGTLPSSGLVQLKVSGTWGPVCD-ITWNV 798
>SB_38678| Best HMM Match : C2 (HMM E-Value=3.1e-29)
Length = 375
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -1
Query: 366 RGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLS--QPFQVAEVFTGHAG 193
RG+ + +S+ +++ LG L+E+ + + RAR +Q S +P A+V HAG
Sbjct: 226 RGLSLSREPDRSVGEVMVSLGYLRLTEKLAVVLVRARDLQPLKSGYKPDPYADVSICHAG 285
Query: 192 K 190
+
Sbjct: 286 R 286
>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
Length = 350
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Frame = -3
Query: 598 KNYHHQERFHHICTGY-LCTS**LDRSCS-SYH-----FCSLGCYHCTLQSHC 461
K +H R H +C Y C S C YH FC + YHC + C
Sbjct: 89 KRHHLYRRCHRVCRRYRYCKSYFGKHKCYYKYHCYLKCFCKVKYYHCRYRRRC 141
>SB_58895| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1838
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 448 DTQFSNGSGEYSGSIQVSKSGSWSRICQVISWYIN 552
+ + S+G Y G +++ +G W +C SW I+
Sbjct: 1103 EVRLSDGKTPYEGRVEIYYNGKWGTVCD-DSWGID 1136
>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
Length = 854
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 448 DTQFSNGSGEYSGSIQVSKSGSWSRICQVISWYINSLY 561
D + ++G + G +++ G W IC + W INS +
Sbjct: 466 DLRLADGKTKNEGRVEIRFHGIWGTIC-IEGWTINSAH 502
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 454 QFSNGSGEYSGSIQVSKSGSWSRICQVISW 543
+ + G G Y G ++V +G+W +C SW
Sbjct: 508 RLAGGRGPYEGRVEVYHNGAWGVVCD-DSW 536
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 445 VDTQFSNGSGEYSGSIQVSKSGSWSRICQ 531
++ + S+G+ G ++V +G W ICQ
Sbjct: 789 IEVRLSDGNSPAEGRVEVFHTGFWGTICQ 817
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,510,662
Number of Sequences: 59808
Number of extensions: 515664
Number of successful extensions: 1603
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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