Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d03f
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 180 2e-46
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 59 4e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 41 2e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.100
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.6
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 2.8
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 3.7
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 5.0
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 6.5
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 25 8.7
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 180 bits (437), Expect = 2e-46
Identities = 93/130 (71%), Positives = 105/130 (80%), Gaps = 3/130 (2%)
Frame = +2
Query: 230 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDS 400
D QFED +LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+
Sbjct: 66 DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125
Query: 401 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIK 580
GSPI IPVG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIK
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIK 185
Query: 581 VVDLLAPYAK 610
VVDLLAPYA+
Sbjct: 186 VVDLLAPYAR 195
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 59.3 bits (137), Expect = 4e-10
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Frame = +2
Query: 311 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 487
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 488 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAK 610
I T + + +AP + + E + TG+K +D + P +
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGR 189
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 40.7 bits (91), Expect = 2e-04
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = +2
Query: 302 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 478
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 479 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAK 610
+ + I+ +E++ TGI +D L A+
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIAR 162
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.100
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = -2
Query: 576 IPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPE 397
+P T SC T S +G S+ ++ ++ + P S+ + I + S T P
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280
Query: 396 SSTGCPRTKPSVPSMAMVRTVFSPKCWATSST 301
+ST C T S+P T +P TS++
Sbjct: 281 TSTSC-TTSTSIPPTGNSTTPVTPTVPPTSTS 311
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 486 GPRSSIGSPITLMMRPRVSA-PTGIRIGEPESSTGCPRTKPSVPSM 352
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 2.8
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +2
Query: 293 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 472
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 473 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 607
+R P K A H + V+ ++ E + G KV + L P+A
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 111 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 221
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 362 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 478
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 426 PTGIRIGEPESSTGCPRTKPSVPSMAMV 343
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 287 RSPRLVLEVAQHLGENTVRTIAMD 358
R+P LVL+ A LGEN + D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,031
Number of Sequences: 5004
Number of extensions: 51515
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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