Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d03f
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               226   1e-59
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 31   0.73 
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            30   1.7  
SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4)                       30   1.7  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_11785| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-28)          28   6.8  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)           27   9.0  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               27   9.0  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  226 bits (552), Expect = 1e-59
 Identities = 106/127 (83%), Positives = 118/127 (92%)
 Frame = +2

Query: 230 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 409
           DVQF+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ  +D+G P
Sbjct: 85  DVQFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGP 144

Query: 410 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 589
           I IPVG ETLGRIINVIGEPIDERGP+ TDK AAIHAEAPEFV+MS +QEIL TGIKVVD
Sbjct: 145 ITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEILETGIKVVD 204

Query: 590 LLAPYAK 610
           LLAPYAK
Sbjct: 205 LLAPYAK 211


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +2

Query: 347 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAE 523
           + + G + L++ G  V  +G+ + +PVG E LGR+++ +G PID +GP    + A +  +
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70

Query: 524 APEFVDMSVQQEILVTGIKVVDLLAPYAK 610
           AP  +  +  +E ++TGIK VD L P  +
Sbjct: 71  APGIIPRTSVKEPMLTGIKAVDSLVPIGR 99


>SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 340 NCVLTQMLGYLKYEAGRSILHLKGI*NRRQVIFEL-HIYHSTDNGNNLTLAFSCRFSS 170
           NC+L  + GYLK ++   I++  G     QV++ L  +Y S + GNNL   F    +S
Sbjct: 48  NCLLWTIYGYLKDDSTIIIVNFVGA--LLQVVYILCFLYFSRERGNNLAFLFYSAIAS 103


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 560 ILVTGIKVVDLLAPYAK 610
           +L TGIKV+DL+ PYAK
Sbjct: 2   VLFTGIKVIDLIEPYAK 18


>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 465 SPITLMMRPRV-SAPTGIRIGEPESSTG 385
           S +T   +P   SAPTGI  G+P SSTG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139


>SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4)
          Length = 231

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -1

Query: 589 IDDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTTL-VNRFAD--YIDDATEGFSSH 422
           +DD Y  Y + L+  +VD L+         V G    L V+ + D  Y+D   +GF SH
Sbjct: 168 VDDLYNGYVDDLIDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDGFQSH 226


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 23/69 (33%), Positives = 29/69 (42%)
 Frame = -2

Query: 531 SGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSM 352
           SG+S+  A +L    GP SS+  P T    P    PTG+ +  P S    P   P  P M
Sbjct: 671 SGSSS--AQMLPPMPGPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGM 725

Query: 351 AMVRTVFSP 325
                  SP
Sbjct: 726 GTHPQQVSP 734


>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 401 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 496
           G PI  P+G   +GR I  IG PI   GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312


>SB_11785| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-28)
          Length = 297

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
 Frame = -1

Query: 235 HIYHSTDNGNNLTLAFSCRFSSIVPLVNGIDCND--FSTF*KXXXXXXXXXXXXXXNSTY 62
           H+Y S D    L    S R  ++  +V  I CND  F                    S +
Sbjct: 112 HLYFSEDRVVRLLFTLSDRLVTVNRVVGCIPCNDEPFGVEDGRIADHQMSASSEYQGSVF 171

Query: 61  CPQHFQKSAAQSGKWASR 8
              HF +  A+   WA++
Sbjct: 172 MEAHFGRLNAEYPSWAAK 189


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 380 GQPVLDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 487
           GQP  D+G P     G   +  G+++N  GEP++  GP
Sbjct: 94  GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130


>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
          Length = 1119

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 425 GAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDM 544
           G + L R++ V+ +PI+E   +P D      A++P+F  +
Sbjct: 15  GDDWLRRLLEVLPDPIEEDNYLPPDFFYDSLADSPQFASL 54


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 256 RQVIFELHIYHSTDNGNNLTLAF 188
           RQ     H +HS D+ NNLT AF
Sbjct: 518 RQPYVTTHNHHSHDHNNNLTTAF 540


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,105,922
Number of Sequences: 59808
Number of extensions: 399934
Number of successful extensions: 1001
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)