Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12d01r
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    29   0.84 
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    26   5.9  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   7.8  

>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -1

Query: 475 YNFMIGNDGRVYEGRGWGMVGAHTFMYNRCTLGLGFVGNYDRHTQVSKLQIERMKLLLEK 296
           Y++M+ NDG+ +E               +  LGL  V N D   + S LQ + M+     
Sbjct: 293 YDWMLLNDGKGWESSS-SHFSVVAMKRRKNYLGLNVVQNDDSRKKNSTLQTQNMRFKSSY 351

Query: 295 GVR 287
           GVR
Sbjct: 352 GVR 354


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 687 TVPLLTSGIFQGCCGKPDGPTIRSAQQLSILYDWSLSSTPSHQTVSHSSLAWRHYV 520
           T+P  +SG  +     P  PT  SA  +S+    S  ST   +T S+     R +V
Sbjct: 116 TLPTQSSGEEEAKYSHPGAPTATSADSISMESRPSNLSTSLSKTTSYPQFQVRQFV 171


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 648 CGKPDGPTIRSAQQLSILYDWS 583
           C  PDG  I +A + SI+Y++S
Sbjct: 348 CTSPDGERIYAASRDSIIYEYS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,654
Number of Sequences: 5004
Number of extensions: 70690
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)