Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12d01r
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987... 30 1.5
01_02_0013 + 10162478-10163581 30 2.0
03_02_0700 - 10517754-10519100 29 2.7
07_03_0736 - 21079880-21080185,21080231-21080429,21080531-210807... 29 4.7
04_03_0096 + 11158108-11159083,11159116-11159744 29 4.7
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 29 4.7
01_06_1411 + 37127098-37128279 28 6.2
01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567 28 6.2
08_01_0832 - 8101657-8101708,8102581-8102660,8102740-8102910,810... 28 8.1
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 28 8.1
>12_02_0506 - 19794383-19794670,19795066-19795140,19795337-19798704,
19799503-19799671,19799758-19799850
Length = 1330
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -2
Query: 201 P*KNWIISNTLIASGTSTVKLPTEWYLKQIVFIVHVK 91
P +N+ ++ L+++G+ ++LP EW L+ + H++
Sbjct: 1120 PFRNFCLTRRLVSNGSEMLELPQEWLLQNSSQLEHIE 1156
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -1
Query: 541 ACVAALRNLQSYFLINLHYDIPYNFMIGNDGRV 443
AC+AALR L S +++LH + P++ + DG +
Sbjct: 180 ACLAALRGLHSRGVVHLHLN-PFHILADADGNI 211
>03_02_0700 - 10517754-10519100
Length = 448
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 478 PYNFMI-GNDGRVYEGRGWGMVGAHTFMYNRCTLGLGFVGNYDRHTQVSKLQIERMKLL 305
PYN ++ G D VY+ + W + +F+ C L F+ + ++IE K+L
Sbjct: 236 PYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPMGPKGPVRIEAGKVL 294
>07_03_0736 -
21079880-21080185,21080231-21080429,21080531-21080768,
21080888-21081098,21081181-21081320,21081400-21081537,
21086208-21087036
Length = 686
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 677 SSRVGYFKGVVASQMGQ--QYAAHNSFRSYTTG 585
+S G F G+VA+ + YAAHNS R Y +G
Sbjct: 150 TSDPGRFNGMVAALVNATADYAAHNSTRRYASG 182
>04_03_0096 + 11158108-11159083,11159116-11159744
Length = 534
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 651 CCGKPDGPTIRSAQQLSILYDWSLSSTPSHQTVSHSSLA 535
CC D I +++ +I Y ++S PS+ H SLA
Sbjct: 266 CCHNVDNVAIDASELTTIAYRGAVSDDPSYTLSMHGSLA 304
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -1
Query: 493 LHYDIPYNFMIGNDGRVYEGR----GWGMVGAHTFMYNRCTLGLGFVGNY 356
L Y P F IG+ V + + G+ H +NRCT G VGNY
Sbjct: 229 LQYANPCRFNIGHFDSVQDEQKDHAGFQTAYRHCSDWNRCTNDTGIVGNY 278
>01_06_1411 + 37127098-37128279
Length = 393
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 614 HNSFRSYTTGHYPAHRHTRLFH 549
H+ F Y GH+P H H L H
Sbjct: 100 HHQFPVYRRGHHPDHDHDPLLH 121
>01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567
Length = 602
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 191 FFQGLV*IRSGTVCVLYITSGDYVVVRIQKAFSYAF 298
FF+G +R GT VL G ++V+ ++AFSY F
Sbjct: 206 FFEGDKSVRYGTQLVL--PDGSFIVIGGRRAFSYEF 239
>08_01_0832 -
8101657-8101708,8102581-8102660,8102740-8102910,
8104181-8104282,8105245-8105346,8106246-8106374,
8106521-8106565,8109387-8109502,8109602-8109670,
8109756-8109801
Length = 303
Score = 27.9 bits (59), Expect = 8.1
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
Frame = -1
Query: 568 VTPDCFTFVACVAALRNLQSYFLINLHYDIPYNFMIGNDGRVYEGRGWGMVGAHTFMYNR 389
V DC + A +A+ N S +N + N+ ND RVY G + +
Sbjct: 97 VNSDCISTAALDSAMGNDGSTECLNFLMEAGANYGGPNDFRVYSVCGCSLPHFWQPKFGN 156
Query: 388 CTLGLGFVGNYDRHTQVSKLQIERMKLLLEKGV-REGFLDPNYHIVAASDIQNTDS 224
+ + + V+K +IE +K K V RE ++ + A D+ D+
Sbjct: 157 ILVEDMIHQPWHQDQHVNKKKIEELKTSGNKAVDREDYISASAFYTKAMDLDPNDA 212
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 207 YRFDPGLSVFCISLAATMW*LGSRKPSLTPFSSNNFILS 323
Y + +FC+ +A + LG +L+P+ S+ F+LS
Sbjct: 740 YYYKEAAHLFCVRIAQGLVHLGKGLLTLSPYHSDRFLLS 778
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,286,168
Number of Sequences: 37544
Number of extensions: 453879
Number of successful extensions: 1159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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