Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c23r
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    30   0.37 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.86 
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   2.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   2.0  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   3.5  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   4.6  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   4.6  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 375 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGW 518
           S  TT+ S   +    S ST   PQTFP+SG +   ++    +   GW
Sbjct: 457 STSTTNPSATPTTGDPSNSTYGGPQTFPNSGNNPNFNRGIAGIVPPGW 504


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -1

Query: 564 CTPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPW 385
           CT    + +  S+ +S P+T ++P     + + P P  S     S+ +  S+   +T   
Sbjct: 229 CTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST----SSTDTNSSPLPTTSTS 284

Query: 384 CPPTVSLRPPARKARLPST 328
           C  + S+ PP   +  P T
Sbjct: 285 CTTSTSI-PPTGNSTTPVT 302


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 562 HPSDTIGLVSINRDVQPTDFISPVALSASEDLPES 458
           HP+ T G VS N +  P   +  V      +LP S
Sbjct: 669 HPTGTFGNVSGNYNTSPAQSVGDVTAEEGSELPSS 703


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -1

Query: 549 PLVSSASTGMSNPLTSSLPW---LCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCP 379
           P  ++AST +S+  +S  PW       A + P P    A  +S   L  N  +S  PW  
Sbjct: 407 PPWAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMN-PSSLPPWQQ 465

Query: 378 PT 373
           PT
Sbjct: 466 PT 467


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -3

Query: 598 PSLVTETSAVRLHPSDTIGLVSI----NRDVQPTDFISPVALSASED 470
           P L + TS +RL PSDT   + +    N ++    + +P+  S S D
Sbjct: 97  PILNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILESTSSD 143


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 32/112 (28%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
 Frame = +3

Query: 360 ASRRPSAGTTDTSKQLSCSPGSPS-TSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLML 536
           +S+ P  G   +       P SPS T       P SG S  AD+   E + V    +L  
Sbjct: 70  SSQSPHHGPVRSPSSRKPLPASPSRTRDHSLRVPVSGHSYSADEKPRERRKVIGNYVLGK 129

Query: 537 TRPMVSEGCRRTALVSVTRDGFNYHHQTITDPDETDILEAASGAEDPARVNE 692
           T    S G  + A    T + F     T   PD T    AAS     A  +E
Sbjct: 130 TIGAGSMGKVKVAHHLKTGEQFAIKIVTRLHPDITKAKAAASAEATKAAQSE 181


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 336 EVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 509
           EV+PSS++   RP   +   S ++   P   ++S  PQ +  +  S L+  AT  + S
Sbjct: 82  EVFPSSVMPQLRPLDSSLSVSPEMDGWPWHHNSSSNPQGYAWT-PSLLSSNATSYLHS 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,668
Number of Sequences: 5004
Number of extensions: 46366
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)