Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12c23r
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0059 + 40805196-40805381,40805593-40805925 35 0.055
03_05_0646 - 26385447-26385463,26385546-26385657,26385838-263859... 33 0.17
01_06_0258 + 27950196-27950749,27953670-27954570 33 0.22
12_02_0408 + 18659494-18660362,18660472-18660634,18660976-186611... 32 0.39
10_06_0170 + 11431540-11432259,11434552-11434644,11434739-114348... 31 0.68
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 31 1.2
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 30 2.1
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 29 2.7
03_05_0413 - 24002534-24002585,24003185-24003305,24003678-240038... 29 2.7
03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898 29 2.7
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 29 2.7
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609... 29 2.7
09_04_0384 - 17153064-17154233 29 3.6
06_01_0290 + 2122758-2123015,2123128-2123544 29 3.6
03_05_0781 + 27654764-27655429,27655902-27656004,27656535-276565... 29 3.6
02_05_1309 + 35627549-35627679,35628377-35629361 29 3.6
11_01_0300 + 2253957-2254245,2254783-2254850,2254967-2255098,225... 29 4.8
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 29 4.8
03_05_0267 - 22538631-22539452 29 4.8
10_07_0100 + 12861588-12862601 28 8.4
09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006 28 8.4
04_04_1125 + 31085106-31085714 28 8.4
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 28 8.4
01_04_0056 + 15476868-15476896,15477581-15478259 28 8.4
>01_07_0059 + 40805196-40805381,40805593-40805925
Length = 172
Score = 35.1 bits (77), Expect = 0.055
Identities = 20/38 (52%), Positives = 20/38 (52%)
Frame = +2
Query: 383 HHGHVEAAQLLSRFAVDFAKAADISGFG*VLAGRQSHG 496
HHGH A S FA FA A I GF V A R SHG
Sbjct: 124 HHGHHPAYSSSSSFAPSFAPAVRIQGFD-VAACRSSHG 160
>03_05_0646 -
26385447-26385463,26385546-26385657,26385838-26385957,
26386120-26386371
Length = 166
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 345 PSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 509
P S A+ P T D S SP PS++P P + R S ++ T +K+
Sbjct: 10 PDSKAATSSPLCLTLDNPTSTSTSPAVPSSAPPPAAALEPSRQSFHERETDAIKA 64
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 324 TSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSL 479
TSYL P+ +SRRPS GT SC P +P+ +P P P + ++ L
Sbjct: 273 TSYLTFGPNPAFSSRRPSEGTA------SCKP-APAPTPAPAGAPGARQTPL 317
>12_02_0408 +
18659494-18660362,18660472-18660634,18660976-18661139,
18661253-18661511,18661605-18661712
Length = 520
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +3
Query: 321 PTSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATG 497
P+S + + + +AG + CSP P P PQ P GRS A + G
Sbjct: 113 PSSLFDPFAGFCLFDATAAAGADSDGWDVRCSPPPPPPPPPPQAPPARGRSKAARRKGG 171
>10_06_0170 +
11431540-11432259,11434552-11434644,11434739-11434806,
11434873-11435011,11435179-11435229,11435600-11435675,
11436216-11436274
Length = 401
Score = 31.5 bits (68), Expect = 0.68
Identities = 25/93 (26%), Positives = 36/93 (38%)
Frame = -1
Query: 657 LPPRCPFHLGPLWSGGGN*TRPWSRRLAQSVCTPRIPLVSSASTGMSNPLTSSLPWLCLP 478
+PP P L +GGG R W +RL+ ++ R + S G+ P LP +
Sbjct: 1 MPPPPPPPLSAAGAGGGGGRRRWQKRLSPTLARDRCYTRAFRSAGL-RPTAVPLPDGAVV 59
Query: 477 ARTYPNPEMSAALAKSTANLESN*AASTCPWCP 379
P AA + L A +T W P
Sbjct: 60 HLWLPPAAPPAAALQPVLLLHGFGARATWQWAP 92
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +2
Query: 482 RQSHGRDEVSGLDIPVDA---DETNG 550
R S G+D VSGLD P DA DE NG
Sbjct: 892 RHSEGKDSVSGLDSPGDATCSDEDNG 917
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +3
Query: 480 ADKATGE--MKSVGWTSLLMLTRPMVSEGCRRTALVSVTRDGFNYHHQ-TITDPDETDIL 650
A++A E +++ G TSLLML R E RR A ++ N +Q I +L
Sbjct: 662 AEEANQEKIVEAGGLTSLLMLLRSSEDETIRRVAAGAIANLAMNETNQDLIMAQGGVSLL 721
Query: 651 E-AASGAEDPARVNEGTGA 704
AS AEDP + GA
Sbjct: 722 SMTASDAEDPQTLRMVAGA 740
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = -1
Query: 585 RRLAQSVCTPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN* 406
RRL+ S +PR L A + S+P S W A +P SAA A+S + +
Sbjct: 245 RRLSCSSFSPRRSLSPRALS--SSPSAMSQMWRAAVAAVGSSPRASAASARSWPEMAAPS 302
Query: 405 AASTCPWCPPTVSLRPPARKA 343
+A P P V+L A+ A
Sbjct: 303 SAPGDPGRGPPVALSSSAQGA 323
>03_05_0413 -
24002534-24002585,24003185-24003305,24003678-24003871,
24005359-24005651
Length = 219
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 510 VGWTSLLMLTRPMVSEGCRRTALVSVTRDGFNY 608
VGW + + +++E C+ ALV V+ DG Y
Sbjct: 102 VGWPPVRSFRKNVLAEKCKAAALVKVSMDGAPY 134
>03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898
Length = 247
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Frame = +1
Query: 205 RWSRSIRCIPRQA---------RRFQRCSRQHRPGAQLLEHHR*QEQFQHRTWKSGL 348
RWS RC+P + F++ R AQLL ++ Q+Q QHR + L
Sbjct: 89 RWSAIARCLPGRTDNEIKNYWRTHFKKARPSRRARAQLLHQYQLQQQQQHRQYLHSL 145
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 587 HGD*RSPSAPLGYHWSRQHQQG 522
HG ++ APLG W+ QH QG
Sbjct: 330 HGSSKAGDAPLGAFWATQHAQG 351
>01_03_0050 +
11959421-11959736,11959892-11959960,11960641-11960979,
11961090-11961152,11962472-11962962,11963773-11964441
Length = 648
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +3
Query: 348 SSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVG 515
S L S+ S K S SP + + T PD G+ ++ +TG+ + G
Sbjct: 539 SGLTQSKEASKTPATKKKTESTSPAAKKLKIEETTAPDEGKKAVKTHSTGKKRKAG 594
>09_04_0384 - 17153064-17154233
Length = 389
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 330 YLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 509
++E W + RR + +++ S S S S SP P++ P + DK +K
Sbjct: 234 WIEFWSDAASDRRRRVSSSSEASTASSSSSSSGCPSPPPRSTP-LWVDNYLDKLGSVLKK 292
Query: 510 VGW 518
GW
Sbjct: 293 GGW 295
>06_01_0290 + 2122758-2123015,2123128-2123544
Length = 224
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 378 AGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPM--V 551
A T ++ +CSPGSP +S + SG D A ++ G L L++ V
Sbjct: 14 AATAAEDERFACSPGSPVSSGSGKRGSGSGSGDEVDDAGCDVGGGGARKKLRLSKDQAAV 73
Query: 552 SEGCRRT 572
E C +T
Sbjct: 74 LEECFKT 80
>03_05_0781 +
27654764-27655429,27655902-27656004,27656535-27656590,
27656895-27657059,27657078-27657083,27657657-27657770,
27658170-27658262
Length = 400
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 378 AGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLAD 485
A DT++++S SP + PKP+ D+ + SL D
Sbjct: 58 ASHPDTARRVSVSPAAVEPPPKPRALLDAIKRSLLD 93
>02_05_1309 + 35627549-35627679,35628377-35629361
Length = 371
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +2
Query: 302 IADKSSSNIVLGSLAFLAGGLKETVGGHHGHVEAAQLLSRFAVDFAKAADISGFG*VLAG 481
+A++ + +G +A LAG L++ G GH +AA AVD A A VL G
Sbjct: 200 LAEEPLDGLAVGLVAELAGELEDAGGADDGHADAAAA----AVDLAVA--------VLGG 247
Query: 482 RQSHGRDEVSGL 517
R ++G G+
Sbjct: 248 RLANGEGGAIGV 259
>11_01_0300 +
2253957-2254245,2254783-2254850,2254967-2255098,
2255811-2255969,2256124-2256489
Length = 337
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 390 DTSKQLSCSPGSPSTSPKPQTFP--DSGRSSLADKATGEMKSVG 515
+ +K+ SP SPSTSP P P SG A AT M S+G
Sbjct: 35 EAAKEYQSSPSSPSTSPTPSPPPVAASGHGGEA-AATPTMWSLG 77
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 432 STANLESN*AASTCPWCPPTVSLRPPARKARLPST 328
S++N++SN S+ P P SL PPA+ L +T
Sbjct: 290 SSSNVDSNVTKSSGPLVVPPTSLPPPAQPETLATT 324
>03_05_0267 - 22538631-22539452
Length = 273
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Frame = +3
Query: 411 CSPGSPSTSPKP---QTFPDS---GRSSLADKATGEMKSVGW---TSLLMLTRPMVSEGC 563
CSP SP SP P +T P S R A + T +GW + ++ L RP+V C
Sbjct: 183 CSPSSPPASPSPSPARTSPPSSSPSRGCSARRPTPSPPVLGWVIPSVVVALLRPLV---C 239
Query: 564 RRTALVS 584
A++S
Sbjct: 240 DADAVIS 246
>10_07_0100 + 12861588-12862601
Length = 337
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = -1
Query: 588 SRRLAQSVCTPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN 409
S R + +P L S ++ S S+ C P YP P S A S+++
Sbjct: 154 SARACRRPASPGARLASLLNSIFSGKRPSAQRPACSP--DYPEPACSTAPPSSSSSYARR 211
Query: 408 *AASTCPWCPPTVSLRPPARKAR 340
+ P PPT + AR +R
Sbjct: 212 PCHAKTPRTPPTTTTTARARPSR 234
>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
Length = 585
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 582 SVTRDGFNYHHQTITDPDETDILEAASGAEDPARVNEGTGA 704
S R+G N + Q + + E A A D ARV+EG GA
Sbjct: 517 STVREGLNANVQALAEERAALEAEWAQLAADRARVDEGRGA 557
>04_04_1125 + 31085106-31085714
Length = 202
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/69 (27%), Positives = 24/69 (34%)
Frame = -1
Query: 519 SNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCPPTVSLRPPARKAR 340
+ P T PW PA P P + A A P PPT + P +
Sbjct: 54 ATPTTPPTPWTPPPAT--PTPPTPTPWTPTPATPPPTPATPATPTTPPTPAPAPSTPTGK 111
Query: 339 LPSTMLELL 313
P L+LL
Sbjct: 112 CPVDTLKLL 120
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 27.9 bits (59), Expect = 8.4
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = -1
Query: 561 TPRIPLVSSASTGMSNPLTSS-LPWLCLP--ARTYPNPEMSAALAKSTANLESN*AASTC 391
+PR+ SS ++ S+PL S+ P + + A +P + A ST AS
Sbjct: 41 SPRLLFFSSTASSSSSPLLSTGSPSVAVSPNANLSFDPSLIPTPAASTPPASPTANASPP 100
Query: 390 PWCPPTVS-LRPPARKARL 337
P PP LRPP ARL
Sbjct: 101 PSLPPPPPPLRPPPPPARL 119
>01_04_0056 + 15476868-15476896,15477581-15478259
Length = 235
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 336 EVWPSSLVASRRPSAGTTD----TSKQLSCSPGSPSTSPKPQTFPDSGR 470
+ P+ L++ RP+A T T+ + +P + + +PKP T PD R
Sbjct: 50 DTMPNCLISLARPAAPTLPHSHLTNPRHPATPTATAATPKPNTPPDPTR 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,213,339
Number of Sequences: 37544
Number of extensions: 414914
Number of successful extensions: 1828
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1824
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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