Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12c23f
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40070.1 68415.m04923 expressed protein 35 0.034
At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containi... 32 0.32
At3g29080.1 68416.m03641 hypothetical protein 30 0.96
At4g24680.1 68417.m03533 expressed protein 30 1.3
At3g03450.1 68416.m00343 gibberellin response modulator, putativ... 30 1.3
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.3
At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family... 29 1.7
At1g10880.1 68414.m01250 expressed protein contains Pfam profile... 29 1.7
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 29 2.2
At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein s... 29 2.2
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar... 29 2.2
At1g08140.1 68414.m00896 cation/hydrogen exchanger (CHX6a) Note:... 29 2.2
At5g43310.1 68418.m05293 COP1-interacting protein-related contai... 29 2.9
At1g21440.1 68414.m02681 mutase family protein similar to carbox... 29 2.9
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 28 3.9
At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid t... 28 3.9
At3g28790.1 68416.m03593 expressed protein 28 3.9
At2g22470.1 68415.m02664 arabinogalactan-protein (AGP2) identica... 28 3.9
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 28 3.9
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 28 5.1
At1g34000.2 68414.m04216 light stress-responsive one-helix prote... 28 5.1
At1g34000.1 68414.m04215 light stress-responsive one-helix prote... 28 5.1
At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate aldol... 28 5.1
At3g18500.1 68416.m02351 nocturnin-related contains weak similar... 27 6.8
At2g48160.1 68415.m06031 PWWP domain-containing protein 27 6.8
At2g45880.1 68415.m05706 glycosyl hydrolase family 14 protein si... 27 6.8
At1g26240.1 68414.m03201 proline-rich extensin-like family prote... 27 6.8
At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1... 27 9.0
At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1... 27 9.0
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 27 9.0
At4g18760.1 68417.m02772 leucine-rich repeat family protein cont... 27 9.0
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy... 27 9.0
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot... 27 9.0
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 27 9.0
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 35.1 bits (77), Expect = 0.034
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Frame = +3
Query: 303 TRPWSRRLAQSVCTPRIPLVS-SASTGMSNPLTSSL-PWLCLPARTYPNPEMSAALAKST 476
T P S+ +++S R P+ S SA+T +NP S + P PA+ P P + AL+++
Sbjct: 303 TLPPSKTISRSSTPTRRPIASASAATTTANPTISQIKPSSPAPAKPMPTPSKNPALSRAA 362
Query: 477 ANLESN*AASTCPWCP---PTVSLR-PPARKARLP 569
+ + PW P P SL PP + LP
Sbjct: 363 SP-----TVRSRPWKPSDMPGFSLETPPNLRTTLP 392
>At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 695
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = -2
Query: 424 GRQSHGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQGRVNYHHQTITDPDETDILEAA 245
G+Q H + + G++ D+ + + V C LR +Y + I +PD+ +
Sbjct: 206 GKQIHAQILIGGVEC--DSKMNSSLVNVYAKCGDLR---MASYMLEQIREPDDHSLSALI 260
Query: 244 SGAEDPARVNEGTG 203
SG + RVNE G
Sbjct: 261 SGYANCGRVNESRG 274
>At3g29080.1 68416.m03641 hypothetical protein
Length = 445
Score = 30.3 bits (65), Expect = 0.96
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 573 YLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSL 424
+L +WPSSL + T + + S S GSP TSP+ + P RS++
Sbjct: 160 FLTIWPSSLQTLACDTFRLTRFTVKSSVSFGSP-TSPETKLIPSLRRSTI 208
>At4g24680.1 68417.m03533 expressed protein
Length = 1480
Score = 29.9 bits (64), Expect = 1.3
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = -3
Query: 522 GTTDTSKQLSCSPGSPS-TSPKPQTFPDSGRSSLAD--KATGEMKSVGWTSLLMLTRPMV 352
GT+ S + PGSPS S +P + R S AD KA SV W S +RP
Sbjct: 63 GTSSLSPRTESGPGSPSHLSNRPSSGGSVTRPSTADSNKAHDSSSSVAWDS---NSRPSS 119
Query: 351 SEGCRRTALVSVT-RDGLITTTRP*RTQMKR 262
+ G + SV + TRP +Q+ R
Sbjct: 120 ASGVFPSNQPSVALQRPHSADTRPGSSQLSR 150
>At3g03450.1 68416.m00343 gibberellin response modulator, putative /
gibberellin-responsive modulator, putative similar to
GAI (GI:2569938), RGA1 (GB:AAC67333) and RGA2
(GI:2339980) [Arabidopsis thaliana]; possible
involvement in nitrogen metabolism
Length = 547
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 77 LALVQGRSTGVQSTNALVALGDKPYQVHLRIAVSTSGLLNTCAGS 211
+ LV + TGV+ +ALVA + +Q +L +A + + T AGS
Sbjct: 168 VVLVDSQETGVRLVHALVACAEAIHQENLNLADALVKRVGTLAGS 212
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 1.3
Identities = 36/132 (27%), Positives = 47/132 (35%), Gaps = 1/132 (0%)
Frame = +3
Query: 180 PVVCSTPAPVPSFTLAGSSAPLAAXXXXXXXXXXXXXXXXLTRPWSRRLAQSVCTPRIPL 359
P+ +P P + S +PLA L P RL R+P
Sbjct: 394 PLYRRNRSPSPLYRRNRSRSPLAKRGRSDSPGRSPSPVARLRDPTGARLPSPSIEQRLPS 453
Query: 360 VSSASTGMSNP-LTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCPPTVS 536
A S P + LP PA+ P+P A S + + AA+ P S
Sbjct: 454 PPVAQRLPSPPPRRAGLP-SPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLE-SPSPSS 511
Query: 537 LRPPARKARLPS 572
L PP RK LPS
Sbjct: 512 LSPPGRKKVLPS 523
>At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 302
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 135 SETSPTRSIYASLF--RPVVCSTPAPVPSFTLAGS-SAP 242
S +S T S +S+F P + S+P+P P+FT A S SAP
Sbjct: 162 SSSSSTSSSSSSIFPTNPHIYSSPSPPPTFTTATSDSAP 200
>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 651
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 498 LSCSP-GSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSEGCRRTALV 322
LS +P SPS SP P P S S++AD + + W + + PM +E + A +
Sbjct: 69 LSSNPLTSPSLSPPPSPSPRSSGSNIAD------EELMWRAAMAPRSPMKNETHPKVAFM 122
Query: 321 SVTR 310
+TR
Sbjct: 123 FLTR 126
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 567 EVWPSSLVASRRPSAGTTDTSKQLSCSPG-SPSTSPKPQTFPDSGRSSLADKATGEMKSV 391
E+ SS+V + + T T + C SPS SP P P S LA + E++ +
Sbjct: 504 ELVESSMVGAIESRSSTHATIEDPVCEQSPSPSPSPSPSPSPSPSPSVLASECCSEVERI 563
>At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein
similar to chitinase GI:17799 from [Brassica napus];
contains Pfam profiles PF00182: Chitinase class I,
PF00187: Chitin recognition protein
Length = 281
Score = 29.1 bits (62), Expect = 2.2
Identities = 28/109 (25%), Positives = 38/109 (34%)
Frame = -3
Query: 552 SLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLL 373
++ SR GTT C G ++ PKP P SG L G + SV +
Sbjct: 39 NMCCSRWGYCGTTKAYCGTGCQSGPCNSKPKPTPTP-SGSGGLNAGPRGTIASVITPAFF 97
Query: 372 MLTRPMVSEGCRRTALVSVTRDGLITTTRP*RTQMKRTSWRQLAALRTQ 226
V GC A TR I + R++AA+ Q
Sbjct: 98 NSIMSKVGSGC--PAKGFYTRQAFIAAAESFAAYKGTVAKREIAAMLAQ 144
>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
gb|U06698 neuronal kinesin heavy chain from Homo sapiens
and contains a PF|00225 Kinesin motor domain. EST
gb|AA042507 comes from this gene; identical to cDNA
MKRP1 mRNA for kinesin-related protein, GI:16902291,
kinesin-related protein [Arabidopsis thaliana]
GI:16902292
Length = 890
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 354 PLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTA 479
P S+S ++P+TSS P L R+ P+P S+A A STA
Sbjct: 29 PETPSSSHFSASPVTSSSPLL----RSSPSPSTSSAAASSTA 66
>At1g08140.1 68414.m00896 cation/hydrogen exchanger (CHX6a) Note:
CHX6a and CHX6b were originally 1 gene but were split
pased on alignments with other family members; may be a
pseudogene and requires futher investigation; monovalent
cation:proton antiporter family 2 (CPA2) member,
PMID:11500563
Length = 818
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 316 DQGRVNYHHQTITDPDETD-ILEAASGAEDPARVNEGTGAGVEQTTG 179
+ +V Y + ++D ET IL A + D V G+G G E T+G
Sbjct: 724 NDAKVTYIDKAVSDGSETSRILRAMANDYDLFIVGSGSGIGTEATSG 770
>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
similarity to COP1-Interacting Protein 7 (CIP7)
[Arabidopsis thaliana] GI:3327868
Length = 1237
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 456 QTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSEGCRRTALVS 319
Q FP +G+ S K+TG M + + L R ++ G R T +S
Sbjct: 836 QKFPKNGKLSTVSKSTGNMLTRSISPLPPAKRESIATGIRLTRSIS 881
>At1g21440.1 68414.m02681 mutase family protein similar to
carboxyvinyl-carboxyphosphonate phosphorylmutase
GB:O49290 from [Arabidopsis thaliana]; similar to
carboxyphosphonoenolpyruvate mutase (GI:47149)
[Streptomyces hygroscopicus]; contains Prosite PS00161:
Isocitrate lyase signature
Length = 336
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 300 LTRPWSRRLAQSVCT--PRIPLVSSASTGMSNPL 395
+T P A+SVC P+IP+++ A TG N L
Sbjct: 95 ITPPEMAATARSVCAAAPKIPIIADADTGGGNAL 128
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 102 PVCKVPTPWLPSETSPTRSIYA-SLFRPVVCSTPAPVPSFT 221
P KVPTP +PS PT S+ + S+ P V S P P+ T
Sbjct: 45 PSPKVPTPSVPSPYVPTPSVPSPSVPTPSVPSPSVPSPNPT 85
>At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 208
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 528 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEM 400
S TT + +S S G+P+TSP P++ +S + T M
Sbjct: 130 SGATTPGASPVSPSAGAPTTSPSAAKSPETSATSPSSDETPSM 172
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 540 SRRPSAGTT--DTSKQLSCSP-GSPSTSPKPQTFPDSGRSS 427
+ + S+G T DT+ S SP GSPS SP P T D SS
Sbjct: 355 TNKGSSGDTYKDTTGTSSGSPSGSPSGSPTPSTSTDGKASS 395
>At2g22470.1 68415.m02664 arabinogalactan-protein (AGP2) identical
to gi|3883122|gb|AAC77824; supported by cDNA
gi|3883121|gb|AF082299
Length = 131
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +3
Query: 96 AAPVCKVPTPWLPSETSPTRSIYASLFRPVVCSTPAPVPSFTLAGSSAP 242
A+P V P TSPT S AS P PAP PS L +S+P
Sbjct: 50 ASPPVPVNEPTPAPTTSPTTSPVAS---PPQTDAPAPGPSAGLTPTSSP 95
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 558 PSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKAT 409
PSS +S PS+ + + LS SP SP P P + P S S + +T
Sbjct: 90 PSSSPSSAPPSSLSPSSPPPLSLSPSSP-PPPPPSSSPLSSLSPSSSSST 138
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 425 SEDLPESGNVCGFGEVDGEPGEQLSCFDVSVVPADGLLEATSEEGQTSK 571
+E+ P G G + +GE GE+ + +++ G LE S+ +TSK
Sbjct: 999 NEETPRLGENGGCNQQNGESGEESTSVTENII--GGKLEQKSKNSETSK 1045
>At1g34000.2 68414.m04216 light stress-responsive one-helix protein
(OHP2) contains similarity to photosystem II 22 kDa
protein GI:6006279 from [Arabidopsis thaliana]
Length = 145
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -3
Query: 537 RRPSAGTTDTSKQLSCSPGSPSTSPKPQTFP 445
RRPSA T Q P PS+SP P P
Sbjct: 51 RRPSAPPTLREPQKPVPPSQPSSSPPPSPPP 81
>At1g34000.1 68414.m04215 light stress-responsive one-helix protein
(OHP2) contains similarity to photosystem II 22 kDa
protein GI:6006279 from [Arabidopsis thaliana]
Length = 172
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -3
Query: 537 RRPSAGTTDTSKQLSCSPGSPSTSPKPQTFP 445
RRPSA T Q P PS+SP P P
Sbjct: 51 RRPSAPPTLREPQKPVPPSQPSSSPPPSPPP 81
>At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate
aldolase, putative / 3-deoxy-D-arabino-heptulosonate
7-phosphate synthase, putative / DAHP synthetase,
putative similar to 3-deoxy-D-arabino-heptulosonate
7-phosphate GI:170224 from [Nicotiana tabacum],
SP|P21357 from Solanum tuberosum; contains Pfam Class-II
DAHP synthetase family domain PF01474
Length = 527
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 300 LTRPWSRRLAQSVCTPRIPLVSSASTGMSNPLTSSLP 410
++RP S R++ P+ P SSAS + P T + P
Sbjct: 29 VSRPTSFRISAVQTDPKTPAASSASAATTTPATLTKP 65
>At3g18500.1 68416.m02351 nocturnin-related contains weak similarity
to Nocturnin (CCR4 protein homolog) (Swiss-Prot:O35710)
[Mus musculus]
Length = 262
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 179 TSGLLNTCAGSLIHSRWVLSAASCLQDVRFIWVRYGLVVV 298
T L + G ++HS LS+ S + R+ WV + ++
Sbjct: 218 TLSLASLVCGIMLHSLLFLSSGSLISQERYCWVTFTCFII 257
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 534 RPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDS--GRSSLADKATGEMKSVGWTSL 376
RP GT+ LS SP PS+SP P P S G ++ D ++ G+ ++
Sbjct: 1123 RPVFGTSHQHMSLS-SPPLPSSSPPPPPAPPSQQGECAMPDSYLNGFENGGYRNV 1176
>At2g45880.1 68415.m05706 glycosyl hydrolase family 14 protein
similar to beta-amylase GI:13560977 from [Castanea
crenata]
Length = 691
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 106 CAKYQRPGCPRRQA--LPGPSTHRCFDQWSAQHLRRFPHS 219
C + + P CP + PG +C+D++ ++ LR+ S
Sbjct: 420 CGELRYPSCPIKHGWRYPGVGEFQCYDKYLSKSLRKAAES 459
>At1g26240.1 68414.m03201 proline-rich extensin-like family protein
similar to hydroxyproline-rich glycoprotein precursor
gi|727264|gb|AAA87902; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 478
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 117 PTPWLPSETSPTRSIYASLFRP-VVCSTPAPVPSFTLAGSSAP 242
P P++ S P +Y S P V +P P PS++ + SS P
Sbjct: 432 PPPYVYSSPPPPPYVYKSPSPPPYVYKSPPPPPSYSYSYSSPP 474
>At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1.2)
plant glutamate receptor family, PMID:11379626
Length = 867
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 561 WPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSL 424
W S+ S R +T + + PG + SPK ++ +SGR L
Sbjct: 397 WNSNGSFSNRRQLSSTHDNLETIIWPGGSAQSPKGRSLRESGRKKL 442
>At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1.2)
plant glutamate receptor family, PMID:11379626
Length = 750
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 561 WPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSL 424
W S+ S R +T + + PG + SPK ++ +SGR L
Sbjct: 397 WNSNGSFSNRRQLSSTHDNLETIIWPGGSAQSPKGRSLRESGRKKL 442
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 57 LLYYCAVLLWYRGAAPVCKVPTPWLPSETSPTRSIYASLFRPVVCS 194
+ ++ ++LL + A V K T W SP I +SLF + C+
Sbjct: 9 ITFFLSLLLRFSSAQTVVKA-TYWFAESESPLAQIDSSLFTHLFCA 53
>At4g18760.1 68417.m02772 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 431
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = -3
Query: 525 AGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSE 346
+ T + LS +P SP+TSP P P S S L K ++S L P V +
Sbjct: 16 SATISAAPSLSPTP-SPTTSPIPPHKPSSSSSPLDPKQLKALES--------LNIPTVKD 66
Query: 345 GCRRTALVSVTRDGLIT 295
C T ++T
Sbjct: 67 PCNHRPTTKSTSSSVVT 83
>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to
uclacyanin 3 GI:3395770 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin 3 (UCC3)GI:3395769
Length = 222
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -3
Query: 558 PSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTS 379
PS S PS+ S + +P S + +P P P S + A K +G T
Sbjct: 155 PSPPSPSLPPSSLPPSASPPTNGTPDSETLTPPPAPLPPSLSPNAASKGVMSYGIIGVTM 214
Query: 378 LLM 370
+LM
Sbjct: 215 ILM 217
>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
similar to SP|O35134 DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194) {Mus musculus}; contains InterPro
accession IPR000722: RNA polymerase, alpha subunit
Length = 1670
Score = 27.1 bits (57), Expect = 9.0
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = -2
Query: 430 LAGRQSHGRDEVSGLDIPVDAD---ETNGIRGVQTDCASLRDQGRVNYHHQTITDPDETD 260
+AG ++ D VSG D D E + + +D + Q ++ ++ DET+
Sbjct: 1321 IAGNETDNDDSVSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSE-DETN 1379
Query: 259 ILEAASGAEDPA--RVNEGTGAGVEQT 185
+ SG EDP NE T E T
Sbjct: 1380 EPSSISGVEDPEMDSENEDTEVSKEDT 1406
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 489 SPGSPSTSPKPQTFPDS 439
SP SP++SPKP++ DS
Sbjct: 127 SPQSPASSPKPESLADS 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,005,694
Number of Sequences: 28952
Number of extensions: 338306
Number of successful extensions: 1341
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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