Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c22r
         (709 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.32 
UniRef50_Q5APK1 Cluster: Potential mitochondrial protein; n=1; C...    37   0.42 

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.5 bits (83), Expect = 0.32
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 504 AGWWYLPVRTHKTSYRQY 557
           A WWYLP RTHK SY +Y
Sbjct: 569 AEWWYLPARTHKRSYHRY 586


>UniRef50_Q5APK1 Cluster: Potential mitochondrial protein; n=1;
           Candida albicans|Rep: Potential mitochondrial protein -
           Candida albicans (Yeast)
          Length = 226

 Score = 37.1 bits (82), Expect = 0.42
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 169 VVGRNSQLISFLHWHYYFNIELLRKKNNYYIKWSIFIYSKDDRIEY-VIFFK 321
           ++G+ SQ+I F+    YF IE L  KN  +I W+ FI    ++I    +FF+
Sbjct: 156 IIGKLSQVIVFVSLSSYFLIEFLENKNIIHIPWNYFITIGKEKINLKQLFFE 207


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,819,616
Number of Sequences: 1657284
Number of extensions: 12353993
Number of successful extensions: 25012
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25006
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)