Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c22r
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        28   6.5  
SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                28   8.5  
SB_41104| Best HMM Match : p450 (HMM E-Value=0)                        28   8.5  

>SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 351 WIVSSSTHLYFKKNHVFNTIIFTVNKY*PFDIVIVFFS 238
           W+     HLYF   HV+NT    +  Y  F  VI+F S
Sbjct: 356 WMFVEGVHLYFMVVHVYNTQTLKIRYYMLFGWVIIFNS 393


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 586 IHSLTFVKYVHISL*KLATVPD--SKIGTVASIDT 684
           +H +   +YVH +L KL+T+P   +K+ T+ S+ T
Sbjct: 549 VHEVNLAQYVHQTLSKLSTLPSMYTKLSTLPSMYT 583


>SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 409

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -2

Query: 366 PLNT*WIVSSSTHLYFKKNHVFNTIIFTVNKY*PFDIVIVFFSE*FNIKIIMPMQKRYQL 187
           P +T  I +S  H Y      ++  I   +   P+ I I++ S  ++I I       Y +
Sbjct: 255 PYHTYVIYASPYHTYIIYTSTYHIYIIYAS---PYHIYIIYASP-YHICIYASPYHTYII 310

Query: 186 RVSPHNIFILIDS 148
             SP+NI+I+  S
Sbjct: 311 YASPYNIYIIYTS 323


>SB_41104| Best HMM Match : p450 (HMM E-Value=0)
          Length = 515

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 455 YPTFQTEMHYCFTAEIGRVVVPTRADSQDVLPPVLAIYKIFIVEFIR 595
           YP +Q E+H      IG   +PT AD      P LAI +  I+E +R
Sbjct: 340 YPEYQEEIHQQLDQVIGPDRMPTLADR-----PQLAIIQATIMEVLR 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,691,369
Number of Sequences: 59808
Number of extensions: 379676
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)