Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c22r
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    28   5.7  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    28   5.7  
Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 247 NNYYIKWSIFIYSKDDRIEYVIFFKV*MGGRAYDPSCVKWLTESIEKNS 393
           +N+YIKW + +    D       FK  +G  AY   C  +   S++K +
Sbjct: 181 SNFYIKWQLLMEPAIDYSAQYEQFKNYIGSNAYYQKCAYFYGSSMQKGN 229


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 475 NALLLYGRNRQGGGTYPCG 531
           +A L++GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 475 NALLLYGRNRQGGGTYPCG 531
           +A L++GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 387 KQPKRRHLHLGMSSNSQFYSTTATPPFKP 473
           KQP+++   +G+  N   YS+ A PPF P
Sbjct: 465 KQPRQKRYQMGIPPNRMGYSSDA-PPFIP 492


>Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 387 KQPKRRHLHLGMSSNSQFYSTTATPPFKP 473
           KQP+++   +G+  N   YS+ A PPF P
Sbjct: 465 KQPRQKRYQMGIPPNRMGYSSDA-PPFIP 492


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,125,560
Number of Sequences: 27780
Number of extensions: 309980
Number of successful extensions: 595
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)