Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c22f
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    40   4e-04
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    37   0.003
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    33   0.025
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    33   0.033
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    33   0.043
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    31   0.13 
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    30   0.30 
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    29   0.53 
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          29   0.70 
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    25   6.5  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    25   6.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   6.5  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    25   8.7  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 25/67 (37%), Positives = 37/67 (55%)
 Frame = +1

Query: 310 NCSLALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKLTFHRLTNLKEI 489
           N  L+L SL  LDLS N +++I  +   +L  L  LNLA+NK T         L++L+ +
Sbjct: 350 NVFLSLQSLVSLDLSGNELTEIP-YALGELPQLCSLNLASNKITGCRTFYHISLSHLQIL 408

Query: 490 VLDNNDI 510
           VL  N +
Sbjct: 409 VLSRNHL 415



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
 Frame = +1

Query: 184 LPKTIYSLDLSYNNXXXXXXXXXXXXXXMVELYLNRNHIVNLNCSLALPSLKKLDLSDNS 363
           LP+ + SL+L+ N               +  L L+RNH+ +L+    +PSL+KLD+ DNS
Sbjct: 378 LPQ-LCSLNLASNKITGCRTFYHISLSHLQILVLSRNHLTSLSGLENVPSLEKLDIRDNS 436

Query: 364 ISKIDGHVFDKL---KNLEYLNLANNKFT---SLDKLT----FHRLTNLKEIVLDNNDIG 513
           I+  D   F +L    N E   L+ N FT   S  ++T    F      K+I+LD    G
Sbjct: 437 IT--DVVEFRRLVGNTNFEEAYLSLNPFTKTYSSYRITIFNYFREYPGSKDIMLDGRGPG 494


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
 Frame = +1

Query: 277  LYLNRNHIVNLNCSLALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKL 456
            LYL+ N  V L+C      ++ L+L++  + ++  ++   + NL  L+L++N  + ++ L
Sbjct: 850  LYLSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDIESL 909

Query: 457  ----TFHRL---TNLKEIVLDNNDIGEELRRVNLFD 543
                  HRL    N  + + +  DI   L+++N+ D
Sbjct: 910  KPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNVLD 945



 Score = 33.1 bits (72), Expect = 0.033
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = +1

Query: 274 ELYLNRNHIVNLN-CSLALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLD 450
           EL L  N I  L  C +   +++ L+  +N +S +    F  L NL+YL+++ N+   L 
Sbjct: 630 ELTLEGNEIAYLTGCPV---TIRDLNAVENRLSSLTS--FSNLLNLQYLDISYNQLEDLT 684

Query: 451 KLTFHRLTNLKEIVLDNNDI 510
            L+   L +L+E+ +D+N +
Sbjct: 685 GLS--SLIHLRELKVDSNHL 702


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +1

Query: 277 LYLNRNHIVNLNCSLA--LPSLKKLDLSDN-SISKIDGHVFDKLKNLEYLNLANNKFTSL 447
           LYL  N I+    +    L  L+ L L++N ++   DG+  D  + +  LNL++     +
Sbjct: 222 LYLEANEIILSKATSFKNLQFLQTLSLANNLNLYSADGYAVDVFQGINNLNLSSTSLADV 281

Query: 448 DKLTFHRLTNLKEIVLDNNDI 510
            +L  H L  L  + +  N+I
Sbjct: 282 AELPVHTLHKLTFLDISENNI 302



 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 328 PSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANN 432
           PSL+ L L  N I       F  L+ L+ L+LANN
Sbjct: 217 PSLEVLYLEANEIILSKATSFKNLQFLQTLSLANN 251


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = +1

Query: 277  LYLNRNHIVNLNCSLALP-SLKKLDLSDNS-----ISKIDGHVFDKLKNLEYLNLANNKF 438
            LY N N + +   + AL  SL+ LD+S N+     + K +     KL  LEYLNL+ N +
Sbjct: 882  LYANGNRLSSFPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGNTW 941

Query: 439  TSLDKLTFHRLTNLKEIVLDN 501
                + + H  TN  +  L N
Sbjct: 942  F---RFSEHEDTNFTKSYLKN 959


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +1

Query: 277 LYLNRNHIVNL-NCSLALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDK 453
           L +  N I    N +     L++L +S N ++   G   + L+NLE L+++NN    L  
Sbjct: 197 LSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSG--IEVLENLEILDVSNNMIKHLSY 254

Query: 454 LTFHRLTNLKEIVLDNNDI 510
           L    L NL E+   NN++
Sbjct: 255 LA--GLKNLVELWASNNEL 271



 Score = 31.9 bits (69), Expect = 0.075
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +1

Query: 331 SLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKLTFHRLTNLKEIVLDNNDI 510
           +L +LDL DN I +I+    D +KNL YL+L+ N   ++  +  + L  L+ +    N I
Sbjct: 83  TLTELDLYDNLIVRIEN--LDNVKNLTYLDLSFNNIKTIRNI--NHLKGLENLFFVQNRI 138


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
 Frame = +1

Query: 316 SLALPSLKKLDLSDNSISKIDG-----HVFDKLKNLEYLNLANNKFTSLDKL----TFHR 468
           SL  P +  + LSDN++  +         + KL NL   +LANN+ TSL  L       +
Sbjct: 210 SLNFPDVISVSLSDNNLQSVTAVTTLAQTWPKLLNL---SLANNRITSLSDLDPWSPKTK 266

Query: 469 LTNLKEIVLDNNDI 510
           L  L+E+VL  N I
Sbjct: 267 LPELQELVLVGNPI 280


>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 343 LDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKLTFHRLTNLKEIVLDNNDIGE 516
           +D +DN I  +    F ++K L+ L   NN+ T++       L NLK + L  N + E
Sbjct: 46  IDFTDNDIRYLGN--FPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQE 101


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 298 IVNLNCSLALPSLKKLDLSDNSISKIDGHVFDKLKNL--EYLNLANNKFTSLDKLTFHRL 471
           I++++ SL    L ++ L D    +   H  +KLK++  +YL     + T LDKL    +
Sbjct: 10  IISIDESLITSRLSQI-LDDVLDDRSSSHSVEKLKDVAVKYLQFCQFQPTLLDKLLSKYV 68

Query: 472 TNLKEIVLDNNDIGE 516
            NL   +L   +IG+
Sbjct: 69  PNLASYLLKVKNIGK 83


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +1

Query: 277 LYLNRNHIVNLNCSLALPSLKKLDLSDNSISKIDGHVFDKL---KNLEYLNL 423
           L+ N + I +L   +     +KL + +NSISK++G  + K+    +  YLNL
Sbjct: 164 LHKNCSEIEHLPSKVKSELQQKLSVMENSISKVEGICYSKILREADKRYLNL 215


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 310 NCSLALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKL 456
           N  LAL +LK+  + +N + KI+G   +  + L  +  AN  F +L  +
Sbjct: 56  NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAM 104


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 996

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 292  NHIVNLNCSLALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLD 450
            N +  LN    +  ++K+D  DNS  ++    FDK+  +  + +  + F ++D
Sbjct: 899  NGVTTLNLEDFVREIRKID--DNSYVRVSTSTFDKVPVVLTIKMNKHYFPTID 949


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 334 LKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKLTFHRLTNLKE 486
           L + D    ++SK+       ++   YLN+ N +  SL+      L  L+E
Sbjct: 547 LLRRDALSTTVSKLQNAYSTVMEETAYLNVKNTELVSLNNQLERELAYLRE 597


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +1

Query: 64  SANSLCDGTCFCNYKHADQDYMGETVDCSHRNVDAKVNLTL 186
           S  S      F NY   D   +G T+D  H +V    NL L
Sbjct: 13  SGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVL 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,011
Number of Sequences: 5004
Number of extensions: 45682
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)