Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c22f
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    52   6e-09
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   5.4  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   5.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 51.6 bits (118), Expect = 6e-09
 Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
 Frame = +1

Query: 160 VDAKVNLTLPKTIYSLDLSYNNXXXXXXXXXXXXXXMVELYLNRNHI--VNLNCSLALPS 333
           VD    L L + I  L+LSYN               +  L L  N I  +  N  L L +
Sbjct: 326 VDETTFLGLIRLIV-LNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYN 384

Query: 334 LKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKLTFHRLTNLKEIVLDNNDI 510
           L  L+LSDN +  +   +F+ L  L  L L+ N   S+D L F   ++LKE+ L  N++
Sbjct: 385 LHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNEL 443



 Score = 47.2 bits (107), Expect = 1e-07
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
 Frame = +1

Query: 274  ELYLNRNHIVNL--NCSLALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSL 447
            E+YL+ N +  L  +  +   +++ L ++ + I  I    F+ L NL+ L+L +N+   L
Sbjct: 798  EVYLDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIREL 857

Query: 448  DKLTFHRLTNLKEIVLDNNDIG 513
                F RL++L+E+ L NN IG
Sbjct: 858  KGFEFERLSHLRELYLQNNLIG 879



 Score = 46.8 bits (106), Expect = 2e-07
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 3/145 (2%)
 Frame = +1

Query: 79   CDGTCFCNYK-HADQDYMGETVDCSHRNVDAKVNLTLPKTIYSLDLSYNNXXXXXXXXXX 255
            C+ TC    K + D+ +    VDCS   V+ ++   +P     + L  N           
Sbjct: 757  CEMTCPAGCKCYNDRTWNTNAVDCSGLGVE-EIPRRIPMDATEVYLDGNVLRELQNHVFI 815

Query: 256  XXXXMVELYLNRNHIVNLNCSL--ALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLAN 429
                M  LY+N + I ++       L +L+ L L DN I ++ G  F++L +L  L L N
Sbjct: 816  GRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQN 875

Query: 430  NKFTSLDKLTFHRLTNLKEIVLDNN 504
            N    +  LTF  L +L+ + L  N
Sbjct: 876  NLIGFIGNLTFLPLRSLEILRLSGN 900



 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +1

Query: 277 LYLNRNHIVNL-NCSLA-LPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLD 450
           L L  N I N  N S   L  L  L L  N I  +   +   L NL+ LNLA NK   ++
Sbjct: 459 LDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVE 518

Query: 451 KLTFHRLTNLKEIVLDNNDIGE 516
           +  F R   L+ I LD N + +
Sbjct: 519 RYAFERNMRLEAIRLDGNFLSD 540



 Score = 34.7 bits (76), Expect = 7e-04
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 349 LSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKLTFHRLTNLKEIVLDNNDIGE 516
           L  N + ++  HVF   KN+  L +  +   S+   TF+ L NL+ + L++N I E
Sbjct: 801 LDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRE 856



 Score = 32.7 bits (71), Expect = 0.003
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
 Frame = +1

Query: 163 DAKVNLTLPKTIYSLDLSYNNXXXXXXXXXXXXXXMVELYLNRNHIVNLNCSL--ALPSL 336
           DA   LT+ +T    + SYN+              + E++L  N + +L   +   L  L
Sbjct: 255 DALTGLTVLRTF---NASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQL 311

Query: 337 KKLDLSDNSIS--KIDGHVFDKLKNLEYLNLANNKFTSLDKLTFHRLTNLKEIVLDNNDI 510
             L+L+ N +   ++D   F  L  L  LNL+ N  T +D   F  L  L+ + L NN I
Sbjct: 312 LVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSI 371



 Score = 29.1 bits (62), Expect = 0.036
 Identities = 24/88 (27%), Positives = 42/88 (47%)
 Frame = +1

Query: 277 LYLNRNHIVNLNCSLALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKL 456
           L L+ NHI   + +    +LK LD+  N I  +  +   +   ++ L+ ++N+ T L  L
Sbjct: 554 LNLSENHIEWFDYAFIPGNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPL 613

Query: 457 TFHRLTNLKEIVLDNNDIGEELRRVNLF 540
           +      L  + ++NN I   L R N F
Sbjct: 614 SVPDSVEL--LFINNNYI--NLVRPNTF 637



 Score = 26.6 bits (56), Expect = 0.19
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +1

Query: 319 LALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKLTFHR 468
           L L  L  L++ ++++  +  +    L NL+ LNL  N+   ++ +  +R
Sbjct: 144 LGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLNR 193


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 257  SNIIDESIDVILLYDKSNEYIVLGNVKLTLASTFLWEQSTVS 132
            S+++D S  V     K N+YIV  +   +  S+FL++ S  S
Sbjct: 929  SSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYKSSESS 970


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 229 LYYCMTNLMNISFWVTLN*PWRPRFC 152
           L+Y + +L     W T   PW  R+C
Sbjct: 123 LFYLLVSLRIDLPWRTCGNPWNTRYC 148


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 229 LYYCMTNLMNISFWVTLN*PWRPRFC 152
           L+Y + +L     W T   PW  R+C
Sbjct: 176 LFYLLVSLRIDLPWRTCGNPWNTRYC 201


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 154 CGSSRLFRPCSLDLRVYSYRSTCHRRGNWRMRRI 53
           C ++ +   C++ L  Y +     R G W  RRI
Sbjct: 108 CSTASILNLCAISLDRYIHIKDPLRYGRWVTRRI 141


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 15/76 (19%), Positives = 32/76 (42%)
 Frame = +1

Query: 283 LNRNHIVNLNCSLALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKLTF 462
           L+   + +L+ SL+      L +SD++  +    +  +  N+E  N   + FT +   T 
Sbjct: 526 LDSTELADLDISLSENLSSGLSISDSTKPETSKGINAEPSNIEESNNMTDSFTRIANNTI 585

Query: 463 HRLTNLKEIVLDNNDI 510
             L  L  +     ++
Sbjct: 586 QELYTLNNMYKPTREV 601


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +2

Query: 59  SHPPIPSAMARA--SVTINTQIKTTWAKQSTAPTET 160
           SHP  P A A    ++T  T   TT    +T P  T
Sbjct: 646 SHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTT 681


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 284 RYSSTIVDESNIIDES 237
           RY+  I+ + NI+DES
Sbjct: 61  RYNECILKQFNIVDES 76


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 284 RYSSTIVDESNIIDES 237
           RY+  I+ + NI+DES
Sbjct: 61  RYNECILKQFNIVDES 76


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 322 ALPSLKKLDLSDNSISKIDGHVFDKLKNLEYLNLANNKFTSLDKLTFHRLTNLKEIVLDN 501
           ALP L K   + N   + D   F ++++     L      S+ +   H L  L EI+  N
Sbjct: 101 ALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERN 160

Query: 502 ND 507
            D
Sbjct: 161 GD 162


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 597 HAANAERPDLRGQTQAASVEQI 532
           HA NAE+    GQ    SV Q+
Sbjct: 31  HAGNAEKTLCSGQVCLGSVMQL 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,529
Number of Sequences: 438
Number of extensions: 3258
Number of successful extensions: 24
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)