Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c20r
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   171   5e-43
09_04_0527 - 18337968-18338077,18338440-18341212                       29   2.0  
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444...    28   4.7  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   4.7  
11_01_0645 + 5185341-5185568,5185773-5185823                           27   8.2  
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    27   8.2  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  171 bits (415), Expect = 5e-43
 Identities = 74/134 (55%), Positives = 103/134 (76%)
 Frame = -3

Query: 442 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 263
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 262 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 83
           Y+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++    GGR++T
Sbjct: 68  YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLIT 127

Query: 82  TQGRRDLDRIAAQV 41
           +QGRRDLD++A +V
Sbjct: 128 SQGRRDLDQVAGRV 141


>09_04_0527 - 18337968-18338077,18338440-18341212
          Length = 960

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 565  QGKVCNFACPHGYSL-NIRNIPLQ*NFLNSKITIYFCKMRSVTVKDVEQDKIVKTVAAHL 389
            +G + N    H  SL  +R+IP+   FL+S    YF +M S  V+++   KI      H 
Sbjct: 862  EGALANLHYLHIDSLMELRDIPVGIEFLSSVKEAYFTRMHSDFVRNLRTGKISHIPKVHW 921

Query: 388  KKTG 377
               G
Sbjct: 922  STQG 925


>10_08_0669 +
           19742140-19742189,19742886-19742923,19744260-19744448,
           19746402-19748188
          Length = 687

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = -3

Query: 187 SHFCRSSGSIARKALQSL-----EALKLVEKVQDGGRILTTQGRRDLDRIAAQVRLKAKQ 23
           SH C S  S+ R+ LQS+     EA +L  + ++  R    Q + DLD +A ++ L  + 
Sbjct: 193 SHPCFSKNSLCRELLQSVAATLAEAAELGARCREPPRAGKLQMQSDLDALAGKLDLNLRD 252

Query: 22  QA 17
            A
Sbjct: 253 CA 254


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 335 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 457
           S +YK+ +LRYLD +     S S SFN+L+    L    T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 265 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 149
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
            12268367-12268485,12268779-12268969,12269440-12269650,
            12270072-12270309,12270944-12271329,12271933-12271956,
            12271984-12272077,12272341-12272525,12273025-12273255,
            12273665-12273730,12273816-12274034,12274764-12275003,
            12275244-12275423,12276269-12276535,12276612-12276815,
            12276896-12277048
          Length = 1128

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 424  QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIY 260
            +D+I+ +    ++    V+VP + +LV TA    L P D  W  +R  A LR  +
Sbjct: 947  EDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGMRTTAELRRAH 997


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,754,770
Number of Sequences: 37544
Number of extensions: 309219
Number of successful extensions: 796
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)