Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c20r
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   164   5e-41
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   164   5e-41
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    27   9.7  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  164 bits (398), Expect = 5e-41
 Identities = 79/144 (54%), Positives = 102/144 (70%), Gaps = 1/144 (0%)
 Frame = -3

Query: 451 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 272
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 271 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 95
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 94  RILTTQGRRDLDRIAAQVRLKAKQ 23
           RIL+ QGR+DLDRIA  +R   +Q
Sbjct: 122 RILSKQGRKDLDRIATSLRSSGQQ 145


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  164 bits (398), Expect = 5e-41
 Identities = 79/144 (54%), Positives = 102/144 (70%), Gaps = 1/144 (0%)
 Frame = -3

Query: 451 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 272
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 271 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 95
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 94  RILTTQGRRDLDRIAAQVRLKAKQ 23
           RIL+ QGR+DLDRIA  +R   +Q
Sbjct: 122 RILSKQGRKDLDRIATSLRSSGQQ 145


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = -3

Query: 259 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTT 80
           I S +  K  T ++ G  R G  P      SGS  +K   +  A+K  EK +D GR L  
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKLKK 199

Query: 79  QGRRDLDRIAAQVRLKAKQQ 20
              + + +++     K  ++
Sbjct: 200 TVSKTITKLSVSESKKKTEK 219


>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 487 LNSKITIYFCKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYD 308
           L S +T Y         +DVE+    K V  +L++ G +  P     +  +  +   P+D
Sbjct: 611 LASSLTSYAIPQFMRICQDVEKTGTFKLVKTNLQRLGIMDAPSDSIYIYNSENRNFVPFD 670

Query: 307 PDWFYVRCAAIL 272
            D   +RC   L
Sbjct: 671 ND---LRCKVSL 679


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,406,442
Number of Sequences: 27780
Number of extensions: 275401
Number of successful extensions: 702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)