Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c20r
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...   161   3e-40
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...   161   4e-40
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...   159   2e-39
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063...    30   1.3  
At4g16095.1 68417.m02440 disease resistance protein-related cont...    29   1.7  
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote...    29   2.3  
At5g16500.1 68418.m01928 protein kinase family protein contains ...    28   4.0  
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi...    28   5.2  
At5g46020.1 68418.m05659 expressed protein                             27   6.9  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    27   9.1  

>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  161 bits (391), Expect = 3e-40
 Identities = 71/134 (52%), Positives = 96/134 (71%)
 Frame = -3

Query: 442 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 263
           TVKDV     VK  A+HLK++GK+++P   D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65

Query: 262 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 83
           Y+R  +GV    +I+GG KRNG  P HFC+SSG IAR  LQ LE + +VE    GGR +T
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRIT 125

Query: 82  TQGRRDLDRIAAQV 41
           + G+RDLD++A ++
Sbjct: 126 SSGQRDLDQVAGRI 139


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score =  161 bits (390), Expect = 4e-40
 Identities = 69/137 (50%), Positives = 98/137 (71%)
 Frame = -3

Query: 442 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 263
           TVKDV     VK  A+HLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 262 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 83
           Y+R  +GV    +I+GG KRNG  P HFC+SSG IAR  LQ LE + +VE    GGR +T
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRIT 125

Query: 82  TQGRRDLDRIAAQVRLK 32
           + G+RDLD++A ++ ++
Sbjct: 126 SSGQRDLDQVAGRIAVE 142


>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  159 bits (385), Expect = 2e-39
 Identities = 67/134 (50%), Positives = 97/134 (72%)
 Frame = -3

Query: 442 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 263
           TVKDV   + VK  AAHLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6   TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 262 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 83
           Y+R  +GV    +I+GG KRNG  P HFC+SSG +AR  LQ L+ + +V+    GGR +T
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKIT 125

Query: 82  TQGRRDLDRIAAQV 41
           + G+RDLD++A ++
Sbjct: 126 SSGQRDLDQVAGRI 139


>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
           Domain of unknown function (DUF383) and  PF04064: Domain
           of unknown function (DUF384)
          Length = 339

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 181 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRIAAQ 44
           FCRSSG  A    + + ++ + + K +DG ++L    RR L +I  Q
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQIIRQ 189


>At4g16095.1 68417.m02440 disease resistance protein-related
           contains weak similarity to rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631
          Length = 187

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 97  HRPELSQQASMPPTIAKPCVQYCLM 171
           H P L  Q   PP +   C++YC M
Sbjct: 86  HMPRLPDQHRFPPNLTNICLRYCCM 110


>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 666

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 397 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 251
           +H   +  V  P   D  + T  F+ ++ ++  WF   C+A++ H+ + S
Sbjct: 15  SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64


>At5g16500.1 68418.m01928 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 460 CKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 317
           C        +VE D+    V A  K+T + +  E    VKT  F+ELA
Sbjct: 21  CTTNETNDDNVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68


>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 633

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -3

Query: 244 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVE--KVQDGGRILTTQGR 71
           G +   ++F G  R+G  PSHF  +S   A  +   LE  K V    ++ G +++   G 
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301

Query: 70  RDLDRIA 50
             LD  A
Sbjct: 302 TLLDMYA 308


>At5g46020.1 68418.m05659 expressed protein
          Length = 164

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = -3

Query: 154 RKALQSLEALKLVEKVQDGGRILTTQGRRDLDRIAAQVRLKAKQQAKQ 11
           R+ L+   A +   ++Q+ G+  T Q R+DLDR+A  +R + ++ AK+
Sbjct: 103 REELEKQRAHERYMRLQEQGK--TEQARKDLDRLAL-IRQQREEAAKK 147


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 57  LSRSRLPCVVRMRXXXXXXXXXXNASNDCKALRAILPDDLQKCEGVTPLRLR 212
           +S SRL C+ + +          NA +D         +DL+K  G +PL L+
Sbjct: 178 ISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLK 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543,002
Number of Sequences: 28952
Number of extensions: 245553
Number of successful extensions: 559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)