Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c20f
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   167   6e-42
09_04_0527 - 18337968-18338077,18338440-18341212                       29   2.2  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   5.1  
11_01_0645 + 5185341-5185568,5185773-5185823                           27   8.9  
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    27   8.9  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  167 bits (406), Expect = 6e-42
 Identities = 72/130 (55%), Positives = 100/130 (76%)
 Frame = +3

Query: 141 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 320
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 321 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 500
           Y+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++    GGR++T
Sbjct: 68  YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLIT 127

Query: 501 TQGRRDLDRI 530
           +QGRRDLD++
Sbjct: 128 SQGRRDLDQV 137


>09_04_0527 - 18337968-18338077,18338440-18341212
          Length = 960

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 18   QGKVCNFACPHGYSL-NIRNIPLQ*NFLNSKITIYFCKMRSVTVKDVEQDKIVKTVAAHL 194
            +G + N    H  SL  +R+IP+   FL+S    YF +M S  V+++   KI      H 
Sbjct: 862  EGALANLHYLHIDSLMELRDIPVGIEFLSSVKEAYFTRMHSDFVRNLRTGKISHIPKVHW 921

Query: 195  KKTG 206
               G
Sbjct: 922  STQG 925


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 248 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 126
           S +YK+ +LRYLD +     S S SFN+L+    L    T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 318 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 434
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
            12268367-12268485,12268779-12268969,12269440-12269650,
            12270072-12270309,12270944-12271329,12271933-12271956,
            12271984-12272077,12272341-12272525,12273025-12273255,
            12273665-12273730,12273816-12274034,12274764-12275003,
            12275244-12275423,12276269-12276535,12276612-12276815,
            12276896-12277048
          Length = 1128

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 159  QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIY 323
            +D+I+ +    ++    V+VP + +LV TA    L P D  W  +R  A LR  +
Sbjct: 947  EDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGMRTTAELRRAH 997


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,731
Number of Sequences: 37544
Number of extensions: 316806
Number of successful extensions: 785
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)