Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c19r
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.1  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   4.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   6.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 383 APLTSPQQPIRGYLGLGC 330
           +PLTSP+QP   + G  C
Sbjct: 914 SPLTSPRQPAETHAGSPC 931


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +2

Query: 524 LSGAETQLKRASLSAPGPPAVSRGHG 601
           LSG        SL  PG P +   HG
Sbjct: 132 LSGGPKHPDPGSLQVPGAPMMMSSHG 157


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 704 CGGARXSSTSCRYGDYSDRRSHLHVRSLP 618
           C     SST C Y  YS    H HV   P
Sbjct: 138 CHQGFSSSTWCNYSAYSSASRH-HVDHQP 165


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 611 PHSLRDRGSLLEDQERSRTHASIGFRHHSVLHWWIQN 501
           P+S   R    +   RS THA   + + S++   IQN
Sbjct: 119 PNSALQRARADKTYRRSYTHAKPPYSYISLITMAIQN 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,918
Number of Sequences: 336
Number of extensions: 3859
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)