Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c19r
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   2.8  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    27   3.7  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   3.7  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   4.9  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.5  
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    26   6.5  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    25   8.6  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 463 MDNLHNDVAMIIHGRVGYTNVIQPIFLPPSHL 368
           +D L+ND+ ++ HG +  T  I  I++ P ++
Sbjct: 452 VDALNNDMVILAHGEIEVTVPISTIYVAPVNI 483


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 455 SSQRRGYDYPRTGRIHKCDPADLPAPLTSPQQPIRGYLGLGCWLWKNQRR 306
           SS ++ YD  R       DP ++  PL  P++ I    G  CWLW   RR
Sbjct: 307 SSYQQDYDIYRK----PTDPIEVTIPL--PEEEIT--FGPACWLWDYLRR 348


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 491 VSVNSESTSEELSGAETQLKRASLSAPGPPAVSRGHGASVAQQ 619
           V+ ++ +   EL  + T +   S+S+P    +   H AS A +
Sbjct: 10  VAASTSNKGNELCSSSTDITSLSVSSPNESVIHSSHSASEADE 52


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 92  SSAKRGDPDQGATSSIRESEGSTGVSAAG--AAPPLGVHAEGRRDDTVT-ESTRAVCIGD 262
           +SAKR  PD   TS++  S  +T +++ G        V  +G+    V   ST +V   D
Sbjct: 273 TSAKRRRPDHNHTSTLDASSSNTSLASTGPMTVSSSTVERKGKEASEVNPNSTSSVTFSD 332


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 718 IVGGSVAGLGXHPHXAAMVITLTDGRTSMCGASLLSHT 605
           ++ G V G+G      AM+  +TD   S+ G+++ + T
Sbjct: 424 LIAGGVLGVGDPQLWLAMINYITDSYPSVAGSAIAAFT 461


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 350 GYLGLGCWLWKNQRR 306
           GYLG G W+W  +R+
Sbjct: 39  GYLGKGKWIWTPERK 53


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 107 GDPDQGATSSIRESEGSTGVSAAGAAPPLGVHAEG 211
           G P  G T  I  + G+ G  A   A  +G+H  G
Sbjct: 156 GKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVG 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,868
Number of Sequences: 5004
Number of extensions: 57739
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)