Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12c19r
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340... 30 1.9
At1g07090.1 68414.m00755 expressed protein contains Pfam profile... 29 2.4
At5g13950.1 68418.m01631 expressed protein 29 3.2
At2g42200.2 68415.m05223 squamosa promoter-binding protein-like ... 29 3.2
At2g42200.1 68415.m05222 squamosa promoter-binding protein-like ... 29 3.2
At1g35490.1 68414.m04403 bZIP family transcription factor 29 3.2
At1g26250.1 68414.m03202 proline-rich extensin, putative similar... 28 5.7
At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase, puta... 28 7.5
At3g13040.2 68416.m01625 myb family transcription factor contain... 28 7.5
At3g13040.1 68416.m01624 myb family transcription factor contain... 28 7.5
At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger) fa... 28 7.5
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 27 9.9
>At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340:
Protein of unknown function (DUF740)
Length = 521
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 244 ARTFGNGVIASTLCVNT-QGGRSTCRGDSGGPLAFTYGGRRTLIGITSFGAAQCQRGH 74
AR +G++ VN +GGRS+C G G + GRR+L F + +R H
Sbjct: 421 ARKSCDGMLRGASIVNGFEGGRSSCDGLFHGSITGVETGRRSLCEDGMFHGVEGKRNH 478
>At1g07090.1 68414.m00755 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 196
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/64 (35%), Positives = 30/64 (46%)
Frame = +3
Query: 24 LARIQEANEVTLAKPAGCPR*H*AAPNEVIPIRVRRPPYVKARGPPESPRQVLRPPWVFT 203
+ R++ A E +P P AA I +R R KARG P ++ RPP V T
Sbjct: 111 IGRLRAAYEENGGRPDSNPF---AARAVRIYLREVRESQAKARGIPYEKKKRKRPPTVTT 167
Query: 204 QRVD 215
RVD
Sbjct: 168 VRVD 171
>At5g13950.1 68418.m01631 expressed protein
Length = 939
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 397 QPIFLPPSHLLNN--QFVGTWAWAAGYGRTSDASGSNTRKHQVALQVITNAD 248
QP+ L LLN QF WA G G TS S + T + L+V NA+
Sbjct: 779 QPL-LSTGPLLNQNWQFRSMWANTNGVGCTSQGSQTGTERDPSLLRVANNAE 829
>At2g42200.2 68415.m05223 squamosa promoter-binding protein-like 9
(SPL9) identical to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 369
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 132 PPYVKARGPPESP--RQVLRPPWVFTQRVDAMTPL 230
P V PP +P Q L PPWVF + M+P+
Sbjct: 285 PMTVTMAQPPPAPSQHQYLNPPWVFKDNDNDMSPV 319
>At2g42200.1 68415.m05222 squamosa promoter-binding protein-like 9
(SPL9) identical to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 375
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 132 PPYVKARGPPESP--RQVLRPPWVFTQRVDAMTPL 230
P V PP +P Q L PPWVF + M+P+
Sbjct: 285 PMTVTMAQPPPAPSQHQYLNPPWVFKDNDNDMSPV 319
>At1g35490.1 68414.m04403 bZIP family transcription factor
Length = 300
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +2
Query: 560 LSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSGXMW 682
LS P P +++GH S + + + NH +G W
Sbjct: 61 LSEPASPKINKGHRRSASDTAAYLNSALMPSKENHVAGSSW 101
>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
extensin gi|1165322|gb|AAB53156; contains proline-rich
extensin domains, INTERPRO:IPR002965
Length = 443
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 114 PIRVRRPPYVKARGPPESPRQVLRPPWVFT 203
P + PPYV + PP +P PP+V++
Sbjct: 380 PYVYKPPPYVYSYSPPPAPYVYKPPPYVYS 409
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 114 PIRVRRPPYVKARGPPESPRQVLRPPWVFT 203
P + PPYV + PP +P PP+V++
Sbjct: 398 PYVYKPPPYVYSYSPPPAPYVYKPPPYVYS 427
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 132 PPYVKARGPPESPRQVLRPPWVF 200
PPYV + PP +P PP+V+
Sbjct: 343 PPYVDSYSPPPAPYVYKPPPYVY 365
>At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase,
putative / neoxanthin cleavage enzyme, putative /
carotenoid cleavage dioxygenase, putative similar to
GB:CAB10168 from [Lycopersicon esculentum] (J. Exp. Bot.
47, 2111-2112 (1997)); similar to 9-cis-epoxycarotenoid
dioxygenase [Phaseolus vulgaris][GI:6715257]
Length = 577
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 5 FCNHLESSTYPRSERGDPGET---SRMSPLTLSSAKRGDPDQGATSSIR 142
FC HL ++ R+E GDP S MSP ++ G+P + S IR
Sbjct: 387 FCFHLWNAWEERTEEGDPVIVVIGSCMSPPDTIFSESGEPTRVELSEIR 435
>At3g13040.2 68416.m01625 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 449
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -2
Query: 215 VDPLREHP--GGAQHLPRRLRWTPRFH 141
VD + HP G A + R+RWTP H
Sbjct: 225 VDVVSSHPSPGSAANQKSRMRWTPELH 251
>At3g13040.1 68416.m01624 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 449
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -2
Query: 215 VDPLREHP--GGAQHLPRRLRWTPRFH 141
VD + HP G A + R+RWTP H
Sbjct: 225 VDVVSSHPSPGSAANQKSRMRWTPELH 251
>At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 235
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -1
Query: 363 TTNSWVPGPGLLVMEEPATQVVVT--PGS 283
TT S+ GPG++V+ PAT V T PG+
Sbjct: 5 TTTSFGSGPGIVVVPTPATTVPTTDFPGT 33
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -3
Query: 211 TLCVNTQGGRSTCRGDSGGPLAFTYGGRRTLIGITSFGAAQCQRGH 74
TL QGGRS G SGG L+ R S +A RGH
Sbjct: 121 TLISTGQGGRSKIDGWSGGGLSVD-ASRELTSSSPSSSSASASRGH 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,520,505
Number of Sequences: 28952
Number of extensions: 357764
Number of successful extensions: 1272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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