Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c19f
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   1.9  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   1.9  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   2.5  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   2.5  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   5.9  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   7.7  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 457 MDNLHNDVAMIIHGRVGYTNVIQPIFLPPSHL 552
           +D L+ND+ ++ HG +  T  I  I++ P ++
Sbjct: 452 VDALNNDMVILAHGEIEVTVPISTIYVAPVNI 483


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 118 TNYHEVIGIPMAMELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDGR-TSMCG 294
           +NY+EV    M+  ++ A+E +D     ++  SV  LGT     A++    +GR  S+CG
Sbjct: 316 SNYNEV----MSAMIRPAKEQSDLTDGSLISLSVKELGTTELYPAVLKHSPNGRFVSVCG 371


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 106 VPIETNYHEVIGIPMAMELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDG 276
           +PI  + H+  G  +A    + E GAD     +   S++GL + P   A V+   DG
Sbjct: 772 LPIHVHTHDSAGTAVASMAAALEAGADV--VDVATDSMSGLTSQPSFGA-VLASVDG 825


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -2

Query: 429 VSVNSESTSEELSGAETQLKRASLSAPGPPAVSRGHGASVAQQ 301
           V+ ++ +   EL  + T +   S+S+P    +   H AS A +
Sbjct: 10  VAASTSNKGNELCSSSTDITSLSVSSPNESVIHSSHSASEADE 52


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 202 IVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHT 315
           ++ G V G+G      AM+  +TD   S+ G+++ + T
Sbjct: 424 LIAGGVLGVGDPQLWLAMINYITDSYPSVAGSAIAAFT 461


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 411 STSEELSGAETQLKRASLSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSGKMWMS 232
           ST+  L G ET+L          PA+SR + +S    G +    ++V  S H     W S
Sbjct: 340 STTAYLYGQETELLSTPYCHTSYPAMSRLNSSS----GYTCVSSSSVTNSGHTENNTWRS 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,060
Number of Sequences: 5004
Number of extensions: 32379
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)