Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c19f
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    38   5e-05
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   6.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 38.3 bits (85), Expect = 5e-05
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +1

Query: 196 ARIVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHTRSVTAAHC 339
           +RIVGG+  G+   P +A +  T   G   +CGA+++S    +TAAHC
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGM--ICGATIISKRYVLTAAHC 204


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 351 PGPPAVSRGHGASVAQQ 301
           PGPP V   HG    +Q
Sbjct: 332 PGPPGVPGDHGDHAPKQ 348


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 351 PGPPAVSRGHGASVAQQ 301
           PGPP V   HG    +Q
Sbjct: 332 PGPPGVPGDHGDHAPKQ 348


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 435 NIVSVNSESTSEELSGAETQLKRASLSA 352
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 301 NVEETNSEETHQKDGSSDSVIKRTVVSS 328


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 435 NIVSVNSESTSEELSGAETQLKRASLSA 352
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 216 NVEETNSEETHQKDGSSDSVIKRTVVSS 243


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 435 NIVSVNSESTSEELSGAETQLKRASLSA 352
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 535 NVEETNSEETHQKDGSSDSVIKRTVVSS 562


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 351 PGPPAVSRGHGASVAQQ 301
           PGPP V   HG    +Q
Sbjct: 271 PGPPGVPGDHGDHAPKQ 287


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = -2

Query: 357 SAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSGKMWMSA*P 223
           S PGP   + GHG S        H        + HS  +  S+ P
Sbjct: 410 STPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYP 454


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 321 GASVAQQGGSAHGGATVGQSNHH 253
           G+S   Q G+   G T+G  +HH
Sbjct: 331 GSSPHHQHGNHTMGPTMGPPHHH 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,879
Number of Sequences: 438
Number of extensions: 2685
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)