Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c18r
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    33   0.042
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    31   0.13 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.1  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    27   2.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.7  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   8.5  

>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 498 LDGVVEVIV*CKIYKLIELL-LGQRLVSDVEMSHVVFHIVIGQVESPFQKSSNSCHLVVF 674
           LDGV + I+  K+Y  I  + LG    +DV+M  +V +     +ES  Q + +    +V+
Sbjct: 282 LDGVYDTII-TKLYNRISTMRLGMYTQNDVDMGAMVSNNRFDHLESLIQDAVSKGARLVY 340

Query: 675 GGH 683
           GGH
Sbjct: 341 GGH 343


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 28/94 (29%), Positives = 40/94 (42%)
 Frame = -3

Query: 368  ELGYLLAVDAVPGQHIAEEDQLIIDRITTLWANFAKYGNPTPEPTDLLPVVWSTVEGNKR 189
            E+G L A    PG H A  D  +  R   +   + KY N T +  D +         N+ 
Sbjct: 833  EIGRLAASIQAPGSHDASPDTALYFRDAYIKRLWEKYLN-TVDDKDSVDAY------NRF 885

Query: 188  PYLDIDTDLQLRSRPFHHRMAFWDLFYKLYGELE 87
            P+     D   R    +++  F+D   KLYGELE
Sbjct: 886  PFHSYFGDKSKRPIETYNKDNFFDYATKLYGELE 919


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 221  VVWSTVEGNKRPYLDI 174
            VVW  +E NK+P+LD+
Sbjct: 2252 VVWHLLEDNKKPFLDV 2267


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 142 STTGWPSGISSISSMENWNARNNS 71
           +T+GWP G S +S+ E   A N+S
Sbjct: 453 ATSGWPDGSSLVSTYERVLATNSS 476


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -1

Query: 178  TSTPTCSSEAGPSTTGWPSGISSISSMEN---WNARNNSRNKR*TSTRYG 38
            ++ PT S   GP  +G+PS  ++   M     WN+ N++     T+T  G
Sbjct: 897  SAPPTTSFTPGPGGSGYPSYSNTTQGMNTTSIWNSSNSTIVSNVTATITG 946


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = -3

Query: 641 LERAFNLTDNDMEDHVRHFYIGDETLTEKQFDEFIDFASDYYFNYAVQRSIKKSLADGNK 462
           + R  ++ + D++D+      G+E LTE+Q +EF    +            +K +AD   
Sbjct: 1   MSRHRDVKNLDLDDYELDEEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIAD--- 57

Query: 461 EVYYYVFSYDGGRN 420
            V+YY F  +   N
Sbjct: 58  TVWYYYFDVEKSVN 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,880
Number of Sequences: 5004
Number of extensions: 53741
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)