Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12c18r
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 31 0.72
08_02_0295 - 15449323-15449376,15449625-15449804,15450558-154506... 30 1.7
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 30 1.7
03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381... 30 1.7
02_05_0667 + 30739612-30739783,30739872-30739957,30740832-307408... 30 2.2
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 30 2.2
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 29 3.8
08_01_0699 - 6163662-6163680,6163865-6163943,6163979-6164048,616... 29 5.1
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781... 29 5.1
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 281 LWANFAKYGNPTPEPTDLLPVVWSTVEGNKRP 186
+W +K G+ + E DLL V +TVE N RP
Sbjct: 243 IWTIMSKIGDASKEQIDLLKTVATTVEPNARP 274
>08_02_0295 -
15449323-15449376,15449625-15449804,15450558-15450604,
15450695-15450875,15451348-15451452,15452414-15452473,
15452957-15453041,15453337-15453353
Length = 242
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 584 YIGDETLTEKQFDEFIDFASDYYFNYAVQR-SIKKSLADGNKEVY 453
YIGD+T E F E + A D ++ Y V +K S GN Y
Sbjct: 153 YIGDDTTDENAFKEKLQQAHDIFYFYKVHEIHLKDSRNKGNVVKY 197
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 30.3 bits (65), Expect = 1.7
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Frame = -3
Query: 686 YVTPEDY----EVTGIRAFLERAFNLTDNDMEDHVRHFYIGDETLTEKQFDEFIDFASDY 519
Y+ PE+ + +R L R +L D +ME +RH Y+ ++ K+F + D D
Sbjct: 262 YIIPEETAAGRQPHNLRRELYRTNDLADIEMETILRHCYV----MSPKEFKDASDQGDDV 317
Query: 518 Y---FNYAVQRSIKKSLADGNKEVYYYVFSYDGGRNAMKEYLGITAEGAAHADE 366
+ + Y + K LAD + E D NA +Y+ + E + + +E
Sbjct: 318 FYCEYEYDIHWHNFKRLADIDDEPETKEDPGDEPYNAGNDYVSDSDEDSEYDEE 371
>03_05_0901 +
28635672-28636094,28637623-28637802,28637903-28638172,
28638506-28638757,28639205-28639453,28639533-28639606,
28639798-28639915,28640421-28640555,28640813-28640965
Length = 617
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = -3
Query: 725 YGVTNKEFLTLHAYVTPEDYEVTGIRAFLE----RAFNLTDNDM-EDHVRHFYIGDETLT 561
Y K+ L L++ D E+ + +E R +LTDND+ +DH+R+F G +T
Sbjct: 471 YDCNAKDALVLYSVGIYTDDELKAMVERMESSKLRTVDLTDNDLAKDHLRYFIGGRSEVT 530
Query: 560 EKQFDEFI 537
++ FI
Sbjct: 531 DELVYRFI 538
>02_05_0667 +
30739612-30739783,30739872-30739957,30740832-30740837,
30741521-30741586,30741664-30741834,30742032-30742202,
30742457-30742612,30742705-30742851,30742964-30743035,
30743122-30743652,30743739-30743926,30744781-30744838
Length = 607
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 336 DRIHGQQVAELVRVRSALRRYAE-VLLHGIPASVVREH 446
DR+H Q+VAE+ ++ +R E VL G A+ VR++
Sbjct: 231 DRLHRQKVAEVEKLSQTVRELEEAVLAGGAAANAVRDY 268
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -1
Query: 178 TSTPTCSSEAGPSTTGWPSGISSISSMENWNARNNS 71
T P C + GW G+ ++ +E+WN ++ S
Sbjct: 790 TKWPICPMQVPQQKDGWSCGLFTLKCIEHWNGKDLS 825
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 277 GLILPNTVTPPLSRRTC---CRSCGRQ*KVTSGRIWTSTPTCSSEAGPSTTGWPSGISS 110
G L T + P R+C CRSCGR GR W + P CS AG +T+G P S+
Sbjct: 16 GAALRKTGSAPSPTRSCTTSCRSCGR------GR-WRA-PACSPAAG-ATSGPPRPAST 65
>08_01_0699 -
6163662-6163680,6163865-6163943,6163979-6164048,
6164151-6164266,6164656-6164734,6164831-6164921,
6165006-6165084,6165161-6165248,6165371-6165454,
6165544-6165591,6166118-6166192,6166286-6166362,
6166460-6166548,6166711-6166749,6167133-6167206,
6167496-6167588,6167820-6167917,6168100-6168172,
6168322-6168406,6168513-6168634,6169307-6169414,
6169537-6169608
Length = 585
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 233 DLLPVVWSTVEGNKRPYLDIDTDLQLRSRPFHHRMAFWD 117
D L +WST G P L QL PF+H +FW+
Sbjct: 143 DALAGLWSTALGGNEPRLIKAATDQLNKLPFYH--SFWN 179
>02_04_0214 -
20976977-20977171,20977499-20977611,20978041-20978158,
20978585-20978701,20978836-20978973,20979193-20979318,
20979827-20980015,20980539-20980863,20980977-20981134
Length = 492
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 275 ANFAKYGNPTPEPTDLLPVVWSTVEGNKRPYLDIDTDLQLRSRP 144
A+ +KY PT EP +LP + EG P++ + ++ +P
Sbjct: 328 ASKSKYIKPTVEPDQILPYLKEFTEGTLAPHVKSEPIPEVNDQP 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,944
Number of Sequences: 37544
Number of extensions: 372171
Number of successful extensions: 1107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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