Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12c18r
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_23484| Best HMM Match : COesterase (HMM E-Value=0) 66 4e-11
SB_38136| Best HMM Match : COesterase (HMM E-Value=0) 54 1e-07
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_8608| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_56819| Best HMM Match : COesterase (HMM E-Value=0) 40 0.002
SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_47323| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-09) 30 2.2
SB_19136| Best HMM Match : Pyridox_oxidase (HMM E-Value=8.9) 29 3.0
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 28 6.8
SB_684| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_50562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 69.7 bits (163), Expect = 2e-12
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Frame = -3
Query: 539 IDFASDYYFNYAVQRSIKKSLADGNKEVYYYVFSYDGGRNAMKEYLGITAEGAAHADELG 360
IDF SD+YF+ VQ ++ + + Y YVF + + + GAAHAD+L
Sbjct: 447 IDFGSDFYFSAPVQSAL--IMHNVFARTYMYVFDHCSAAESWR--------GAAHADDLR 496
Query: 359 YLLAVDAVPGQHIAEEDQLIIDRITTLWANFAKYGNPTPEPTDLLPVVWSTVEGNKRPYL 180
+L ++ H E D I + TLW NFAKYGNPTP + +W+ + + YL
Sbjct: 497 FLFR-NSTQASHKEELD--ISQAMVTLWTNFAKYGNPTPF-GPVYGSLWNEFNRSDQVYL 552
Query: 179 DIDTDLQLRS--RPFH-HRMAFWDLFY-KLYGE 93
I + S + +H R AFW+ FY KL E
Sbjct: 553 SIGGPKGVLSMGKNYHGSRTAFWNYFYPKLMNE 585
>SB_23484| Best HMM Match : COesterase (HMM E-Value=0)
Length = 586
Score = 65.7 bits (153), Expect = 4e-11
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 2/168 (1%)
Frame = -3
Query: 575 DETLTEKQFDEFIDFASDYYFNYAVQRSIKKSLADGNKEVYYYVFSYDGGRNAMKEYLGI 396
D+ + K + I+ SD + S+ G Y + F++ R+ ++G+
Sbjct: 392 DKKDSNKIRKKMIEMLSDSFVIAPTHASLTLHSKHG-APTYMFEFTHRSRRHKKPAWMGV 450
Query: 395 TAEGAAHADELGYLLAVDAVPGQ-HIAEE-DQLIIDRITTLWANFAKYGNPTPEPTDLLP 222
H D Y V + Q HI +E D+ + D + T++ NFAKYGNPTP P
Sbjct: 451 V-----HGDTTAYKFGVPLLSAQQHIYDEQDRNVSDMLVTMFVNFAKYGNPTPSPVH--G 503
Query: 221 VVWSTVEGNKRPYLDIDTDLQLRSRPFHHRMAFWDLFYKLYGELERKK 78
W + + YL I ++ L S+ RMAFW+ ++ G + R+K
Sbjct: 504 TNWERFNTSNKAYLKIQPNVVLASKFHPARMAFWNEYFP--GLVSRQK 549
>SB_38136| Best HMM Match : COesterase (HMM E-Value=0)
Length = 590
Score = 54.0 bits (124), Expect = 1e-07
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Frame = -3
Query: 455 YYYVFSYDGGRNAMKEYLGITAEGAAHADELGY-LLAVD-AVPGQHIAEEDQLIIDRITT 282
Y YVFS+ ++ ++ G+ + E G+ L +D A+ Q + D+ + + I T
Sbjct: 432 YLYVFSHRSKNRSIPKWKGVGHKDDTPY-EFGFPFLDLDKALTQQEYDDVDRNVSNYIIT 490
Query: 281 LWANFAKYGNPTPEPTDLLPVVWSTVEGNKRPYLDIDTDLQLRSRPFHHR-MAFWDLFY 108
+ NFAK G+PTPEP + + WS Y++I ++ FH + MAFW+ +Y
Sbjct: 491 FFTNFAKTGHPTPEP--VAGITWSQYNETYPAYMNITAQPRIEYN-FHEKSMAFWNSYY 546
>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = -3
Query: 383 AAHADELGYLLAVDAVPGQHIA--EEDQLIIDRITTLWANFAKYGNPTPEPTDLLPVVWS 210
A H+ Y HIA +ED+ + + L++NF K+G+PTP+P + W
Sbjct: 523 ATHSSNADYTFGAPIHNATHIAYTKEDRNVSHLLLQLYSNFLKFGDPTPQPVQ--GITWE 580
Query: 209 TVEGNKRPYLDIDTDLQLRSRPFHHRMAFWDLF 111
+ YL + Q+ + R+A W+ +
Sbjct: 581 RYSQRQGDYLKVQARPQIADKYEPRRVALWNYY 613
>SB_8608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 42.7 bits (96), Expect = 3e-04
Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 4/148 (2%)
Frame = -3
Query: 548 DEFIDFASDYYFNYAVQRSIKKSLADGNKEVYYY----VFSYDGGRNAMKEYLGITAEGA 381
D +ID D F S + G K Y+ + +Y G M ++L A
Sbjct: 412 DMYIDMVGDAMFTAPAVHSADAFVKQGMKTFLYFWEHRLPNYPGSNVTMPDWLK-----A 466
Query: 380 AHADELGYLLAVDAVPGQHIAEEDQLIIDRITTLWANFAKYGNPTPEPTDLLPVVWSTVE 201
H + +L D Q I D ++ + +W FA+ G P L V W
Sbjct: 467 YHGADAFMMLTADVT--QSILGPDGGLMADVMKMWTAFARDGKPD---AGLAKVTWPEYT 521
Query: 200 GNKRPYLDIDTDLQLRSRPFHHRMAFWD 117
R YL I + ++S+ MAFW+
Sbjct: 522 AATRQYLSIKPNFTVKSKLRAEHMAFWN 549
>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 40.7 bits (91), Expect = 0.001
Identities = 35/142 (24%), Positives = 55/142 (38%)
Frame = -3
Query: 542 FIDFASDYYFNYAVQRSIKKSLADGNKEVYYYVFSYDGGRNAMKEYLGITAEGAAHADEL 363
FID D F S + G K Y+Y + + + A H+ +L
Sbjct: 443 FIDMIGDSMFTAPAVHSADAFIKHGLK-TYFYCWEHRLPNYPGTNVIMPAWVKAYHSADL 501
Query: 362 GYLLAVDAVPGQHIAEEDQLIIDRITTLWANFAKYGNPTPEPTDLLPVVWSTVEGNKRPY 183
+L+ + G E I++ + +WANFA +G P L V W R Y
Sbjct: 502 HFLIDIGIRKGIQ-GPEAGFILNTLK-IWANFATHGKPD---AGLAEVTWPEYTAATRQY 556
Query: 182 LDIDTDLQLRSRPFHHRMAFWD 117
L I + + S+ +AFW+
Sbjct: 557 LSIKPNFTVESKLRAEHVAFWN 578
>SB_56819| Best HMM Match : COesterase (HMM E-Value=0)
Length = 613
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Frame = -3
Query: 386 GAAHADELGYLLAVDAVPGQHI------AEEDQLIIDRITTLWANFAKYGNPTPEPTDLL 225
G H DE+ Y+ + P + I + ++ + + +W FA G+P
Sbjct: 505 GVVHFDEIPYVFGLPWKPNKGIQVATKYTDVERGLSTMVMRMWGEFAYTGSPMKAGDSPQ 564
Query: 224 PVVWSTVEGNKRPYLDIDTDLQLRSRPFHHRMAFWDLFYKL 102
V W + YLDI L + + MAFW+ F L
Sbjct: 565 NVTWPLYSTEQEEYLDIGLQLSVHRKLRPDGMAFWNEFVPL 605
>SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 38.7 bits (86), Expect = 0.005
Identities = 35/143 (24%), Positives = 57/143 (39%)
Frame = -3
Query: 542 FIDFASDYYFNYAVQRSIKKSLADGNKEVYYYVFSYDGGRNAMKEYLGITAEGAAHADEL 363
++D +D F S LA G Y+Y Y G + + + + A HA EL
Sbjct: 209 YVDMMTDAMFTAPAVLSASAFLARGCP-TYFYEIQYRGPLYFTGKPVP-SWQRAYHASEL 266
Query: 362 GYLLAVDAVPGQHIAEEDQLIIDRITTLWANFAKYGNPTPEPTDLLPVVWSTVEGNKRPY 183
++ + + D + LW NFAK G+P +P + VW + + + Y
Sbjct: 267 MFVFGFPLLSNASNPVDANFSRD-VIQLWTNFAKTGDPN-KPRN-ASFVWPAYDAHYQQY 323
Query: 182 LDIDTDLQLRSRPFHHRMAFWDL 114
L + RMAFW++
Sbjct: 324 LRLKPSPSSAQHLRADRMAFWNV 346
>SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 31.9 bits (69), Expect = 0.55
Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 6/161 (3%)
Frame = -3
Query: 575 DETLTEKQFDEFIDFASDYYFNYAVQRSIKKSLADGNKEVYYYVFSYDGGRNAMKEYLGI 396
+E K + +D +D++ +++ G + +Y+ ++ ++ GI
Sbjct: 382 NEDNANKTRESLVDVITDHWIVVPTVTTLRACAKAGARTFFYF---FEKKPPVERKIKGI 438
Query: 395 T-AEG---AAHADELGYLLA--VDAVPGQHIAEEDQLIIDRITTLWANFAKYGNPTPEPT 234
T A G A H + YL +D + D+ R T ANF K G+P
Sbjct: 439 TQAPGWFRATHGADNSYLFGGDLDMTWVNDSLKADREFAKRFRTFIANFVKTGDPNGATV 498
Query: 233 DLLPVVWSTVEGNKRPYLDIDTDLQLRSRPFHHRMAFWDLF 111
W + Y+ +D+ + L S ++ FW+ F
Sbjct: 499 P----TWPQFTPVHQQYVSMDSQISLGSNLRADKVHFWNKF 535
>SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 623 LTDNDMEDHVRHFYIGDETLTEKQFDEFIDFASDYYFNYAVQRSIKK 483
L + DME +++F L EK D + AS+Y FN + ++K
Sbjct: 304 LLERDMEGMLKYFQKEMPDLYEKDMDPVMKIASEYKFNSKKMKRLEK 350
>SB_47323| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-09)
Length = 508
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 275 ANFAKYGNPTPEPTDLLPVVWSTVEGNKRPYLDIDTDLQLRSRPFHHRMAFWD 117
A FAK G P+ P+ W ++ PY+ I ++R RM+ W+
Sbjct: 413 AAFAKTGIPSASNDSRTPL-WPRFSASRSPYMSITPSCEVRHWLLPSRMSLWN 464
>SB_19136| Best HMM Match : Pyridox_oxidase (HMM E-Value=8.9)
Length = 312
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 190 GRIWTSTPTCSSEAGPSTTGWPSGISSI 107
GR T P CSSE G WPS + S+
Sbjct: 21 GRFTTGGPVCSSEYGAFHHRWPSMVVSV 48
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 28.3 bits (60), Expect = 6.8
Identities = 29/85 (34%), Positives = 38/85 (44%)
Frame = +2
Query: 434 RTRTRSNIPPCYRRPMTSL*TAGRRS*SNSLMQNL*THRTASRSASRLRCRNVSRGLPYR 613
RT++RS R P S + RS S S ++ T SRS SR+R R+ S+ L R
Sbjct: 411 RTKSRSRSRIRSRSPARSRSWSHTRSRSRSHTRSRSRSHTRSRSRSRIRSRSRSQELDSR 470
Query: 614 YRSS*KPVPEKLEFLSPRSLRGSHK 688
S K E+ S R R K
Sbjct: 471 TLRSKKSF-ERRSRASHRESRSRSK 494
>SB_684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 230 LLPVVWSTVE--GNKRPYLDIDTDLQLRSRPFHHR 132
+ P + +TVE RP +DI+TD+ + PF+ R
Sbjct: 482 IAPTLNTTVEIHDKSRPIIDINTDVNITPNPFNSR 516
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/72 (36%), Positives = 33/72 (45%)
Frame = +2
Query: 431 RRTRTRSNIPPCYRRPMTSL*TAGRRS*SNSLMQNL*THRTASRSASRLRCRNVSRGLPY 610
RR+R+RS RR + RRS S S +HR+ SRS S R + SR +
Sbjct: 220 RRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHR--SHRSRSRSRSPRRRHSRSRSPTH 277
Query: 611 RYRSS*KPVPEK 646
R S PEK
Sbjct: 278 RRHRSRSHSPEK 289
>SB_50562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 578 GDETLTEKQFDEFIDFASDYYFNYAVQRSI--KKSLADGNKEVY 453
GD T K +++D + YYFN + + K +L D + + Y
Sbjct: 13 GDPRYTNKDLVKYVDIGATYYFNKNMSTYVDYKINLLDNDDDFY 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,504,571
Number of Sequences: 59808
Number of extensions: 427365
Number of successful extensions: 1410
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -