Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c18f
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    29   0.75 
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    28   0.99 
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.0  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   4.0  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   5.3  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   5.3  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    25   9.2  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.2  

>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 48  SIARPRFVAHLASKC-FVGSDYRSYIKYLTAHKQRI 152
           S A    V  +  KC +V SD+RS I+  T HK +I
Sbjct: 207 SSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQI 242


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 20/149 (13%)
 Frame = +3

Query: 249 GLIRGLR--SENGKFS--KFLGIPYAL--VDENNPFGPSVPHPGFEETFEAYDDSVVCPQ 410
           G++ GL    ENGK    +F GI YA   V +     P     G++ + +      +CPQ
Sbjct: 2   GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ 61

Query: 411 VTKGVGVGSLQ---------CLNLNVYVPNTATSRNKRPVMVWIH-XXXXXXXXXXXRDY 560
                    ++         CL LN++VP         PV+ +IH            R  
Sbjct: 62  PFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQC 121

Query: 561 SFDDLVRH----DVIVVSVSYRLGLYGFL 635
              DL         I+VS  +RL L+GFL
Sbjct: 122 DPQDLQADGSPAKFILVSPGHRLNLFGFL 150


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 168 AYLHWKCAVCALSDILYKTGSHFRQNTWTPDVPRTEVG 55
           AYL W C     SDI+Y     +    +   V  T VG
Sbjct: 462 AYLGWNCTFSFFSDIMYGVLYAYTPEVFPSKVRGTAVG 499


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 411 LEDKLRNHRMLRMSLRNQGVVLMARKDCSRRLVRTV 304
           +E   R++ +LRM +  Q   L+ RK  + RLV+ V
Sbjct: 427 IETLQRSNELLRMDISMQNEALLLRKQENDRLVKQV 462


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 406 GQTTESSYASNVSSKPGCGTDGPKGLFSSTSAYGMPKNF 290
           G  T S++  N  S   CGT   +G+     A G  KNF
Sbjct: 45  GFPTASNFELNPKSTDNCGTVDFQGIPWGNKAIGKRKNF 83


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 234 QAGLSSTGQPLLTTSPKEQPIAAYLH-WK 151
           QAGLS   Q +  T+  +Q +  YLH WK
Sbjct: 551 QAGLSDLLQKIADTTDDKQALKNYLHSWK 579


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 225 DPLVDTQRGLIRGLRSENGKFSKFLGIPYALVDENNPFGPSVPHPGFEETFEAYDDSVVC 404
           +P V  + G +  L+  +    +  G    ++D    FG  +    +EE  +AY D  + 
Sbjct: 250 EPGVVEENGCLAFLKYVSFPAMELRGETEFVIDRPEQFGGRMVFKTYEEVEKAYKDLTLS 309

Query: 405 PQVTK 419
           PQ  K
Sbjct: 310 PQDLK 314


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 268 GPKMESSRSFWAYRTH*STRTILSGHQYHTLVSKRHSKHTM 390
           G  M+    FW   T     T+ +G Q  +L+   HSK  M
Sbjct: 366 GGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIM 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,349
Number of Sequences: 5004
Number of extensions: 50397
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)